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Staff at EMBL

Dr. Dmitri Svergun

Group Leader and Senior Scientist
Svergun Group

EMBL Hamburg c/o DESY, Notkestraße 85, 22603 Hamburg, Germany

E-mail: send a mail


PhD 1982, Dr. of Science 1997, Institute of Crystallography, Moscow.
At EMBL since 1991.
Group leader since 2003.
Senior scientist since 2011.


The Crystal Structure of Netrin-1 in Complex with DCC Reveals the Bifunctionality of Netrin-1 As a Guidance Cue. Finci, L.I., Kruger, N., Sun, X., Zhang, J., Chegkazi, M., Wu, Y., Schenk, G., Mertens, H.D., Svergun, D.I., Zhang, Y., Wang, J.H. & Meijers, R. Neuron. 2014 Aug 5. pii: S0896-6273(14)00621-7. doi:10.1016/j.neuron.2014.07.010. Europe PMC

A conformational switch in collybistin determines the differentiation of inhibitory postsynapses. Soykan, T., Schneeberger, D., Tria, G., Buechner, C., Bader, N., Svergun, D., Tessmer, I., Poulopoulos, A., Papadopoulos, T., Varoqueaux, F., Schindelin, H. & Brose, N. EMBO J. 2014 Jul 30. pii: e201488143. Europe PMC

The CD27L and CTP1L Endolysins Targeting Clostridia Contain a Built-in Trigger and Release Factor. Dunne, M., Mertens, H.D., Garefalaki, V., Jeffries, C.M., Thompson, A., Lemke, E.A., Svergun, D.I., Mayer, M.J., Narbad, A. & Meijers, R. PLoS Pathog. 2014 Jul 24;10(7):e1004228. doi: 10.1371/journal.ppat.1004228.eCollection 2014 Jul. Europe PMC

Structure of the C. elegans ZYG-1 Cryptic Polo Box Suggests a Conserved Mechanism for Centriolar Docking of Plk4 Kinases. Shimanovskaya, E., Viscardi, V., Lesigang, J., Lettman, M.M., Qiao, R., Svergun, D.I., Round, A., Oegema, K. & Dong, G. Structure. 2014 Jun 24. pii: S0969-2126(14)00151-8. doi:10.1016/j.str.2014.05.009. Europe PMC

The C-Terminal Random Coil Region Tunes the Ca2+-Binding Affinity of S100A4 through Conformational Activation. Duelli, A., Kiss, B., Lundholm, I., Bodor, A., Petoukhov, M.V., Svergun, D.I., Nyitray, L. & Katona, G. PLoS One. 2014 May 15;9(5):e97654. doi: 10.1371/journal.pone.0097654. eCollection2014. Europe PMC

Flexibility of the Linker between the Domains of DNA Methyltransferase SsoII Revealed by Small-Angle X-Ray Scattering: Implications for Transcription Regulation in SsoII Restriction-Modification System. Konarev, P.V., Kachalova, G.S., Ryazanova, A.Y., Kubareva, E.A., Karyagina, A.S., Bartunik, H.D. & Svergun, D.I. PLoS One. 2014 Apr 7;9(4):e93453. doi: 10.1371/journal.pone.0093453. eCollection2014. Europe PMC

Weak protein-ligand interactions studied by small-angle X-ray scattering. Tuukkanen, A.T. & Svergun, D.I. FEBS J. 2014 Apr;281(8):1974-87. doi: 10.1111/febs.12772. Epub 2014 Mar 19. Europe PMC

Interactions of ataxin-3 with its molecular partners in the protein machinery that sorts protein aggregates to the aggresome. Bonanomi, M., Mazzucchelli, S., D'Urzo, A., Nardini, M., Konarev, P.V., Invernizzi, G., Svergun, D.I., Vanoni, M., Regonesi, M.E. & Tortora, P. Int J Biochem Cell Biol. 2014 Mar 28. pii: S1357-2725(14)00090-9. doi:10.1016/j.biocel.2014.03.015. Europe PMC

Crystal structures of substrate-bound chitinase from the psychrophilic bacterium Moritella marina and its structure in solution. Malecki, P.H., Vorgias, C.E., Petoukhov, M.V., Svergun, D.I. & Rypniewski, W. Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):676-84. doi:10.1107/S1399004713032264. Epub 2014 Feb 15. Europe PMC

Structural Data on the Periplasmic Aldehyde Oxidoreductase PaoABC from Escherichia coli: SAXS and Preliminary X-ray Crystallography Analysis. Otrelo-Cardoso, A.R., da Silva Correia, M.A., Schwuchow, V., Svergun, D.I., Romao, M.J., Leimkuhler, S. & Santos-Silva, T. Int J Mol Sci. 2014 Jan 31;15(2):2223-36. doi: 10.3390/ijms15022223. Europe PMC

The 11th International Conference on Biology and Synchrotron Radiation. Wilmanns, M. & Svergun, D.I. J Synchrotron Radiat. 2014 Jan;21(Pt 1):280-2. doi: 10.1107/S1600577513030609.Epub 2013 Dec 3. Europe PMC

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Varadi, M., Kosol, S., Lebrun, P., Valentini, E., Blackledge, M., Dunker, A.K., Felli, I.C., Forman-Kay, J.D., Kriwacki, R.W., Pierattelli, R., Sussman, J., Svergun, D.I., Uversky, V.N., Vendruscolo, M., Wishart, D., Wright, P.E. & Tompa, P. Nucleic Acids Res. 2014 Jan;42(Database issue):D326-35. doi: 10.1093/nar/gkt960.Epub 2013 Oct 29. Europe PMC

Multicore Iron Oxide Mesocrystals Stabilized by a Poly(phenylenepyridyl) Dendron and Dendrimer: Role of the Dendron/Dendrimer Self-Assembly. Morgan, D.G., Boris, B.S., Kuchkina, N.V., Yuzik-Klimova, E.Y., Sorokina, S.A., Stein, B.D., Svergun, D.I., Spilotros, A., Kostopoulou, A., Lappas, A., Shifrina, Z.B. & Bronstein, L.M. Langmuir. 2014 Jul 22;30(28):8543-50. doi: 10.1021/la502409r. Epub 2014 Jul 8. Europe PMC

Structural and functional insights into peptidoglycan access for the lytic amidase LytA of Streptococcus pneumoniae. Mellroth, P., Sandalova, T., Kikhney, A., Vilaplana, F., Hesek, D., Lee, M., Mobashery, S., Normark, S., Svergun, D., Henriques-Normark, B. & Achour, A. MBio. 2014 Feb 11;5(1):e01120-13. doi: 10.1128/mBio.01120-13. Europe PMC

The histone chaperones Vps75 and Nap1 form ring-like, tetrameric structures in solution. Bowman, A., Hammond, C.M., Stirling, A., Ward, R., Shang, W., El-Mkami, H., Robinson, D.A., Svergun, D.I., Norman, D.G. & Owen-Hughes, T. Nucleic Acids Res. 2014;42(9):6038-51. doi: 10.1093/nar/gku232. Epub 2014 Mar 31. Europe PMC

Structural Analysis of Influenza A Virus Matrix Protein M1 and Its Self-Assemblies at Low pH. Shtykova, E.V., Baratova, L.A., Fedorova, N.V., Radyukhin, V.A., Ksenofontov, A.L., Volkov, V.V., Shishkov, A.V., Dolgov, A.A., Shilova, L.A., Batishchev, O.V., Jeffries, C.M. & Svergun, D.I. PLoS One. 2013 Dec 16;8(12):e82431. doi: 10.1371/journal.pone.0082431. Europe PMC

Staphylococcus aureus thiaminase II: oligomerization warrants proteolytic protection against serine proteases. Begum, A., Drebes, J., Kikhney, A., Muller, I.B., Perbandt, M., Svergun, D., Wrenger, C. & Betzel, C. Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2320-9. doi:10.1107/S0907444913021550. Epub 2013 Nov 19. Europe PMC

Hydrolytically Degradable Polymer Micelles for Drug Delivery: A SAXS/SANS Kinetic Study. Filippov, S.K., Franklin, J.M., Konarev, P.V., Chytil, P., Etrych, T., Bogomolova, A., Dyakonova, M., Papadakis, C.M., Radulescu, A., Ulbrich, K., Stepanek, P. & Svergun, D.I. Biomacromolecules. 2013 Nov 11;14(11):4061-70. doi: 10.1021/bm401186z. Epub 2013Oct 25. Europe PMC

Examination of matrix metalloproteinase-1 in solution: a preference for the pre-collagenolysis state. Cerofolini, L., Fields, G.B., Fragai, M., Geraldes, C.F., Luchinat, C., Parigi, G., Ravera, E., Svergun, D.I. & Teixeira, J.M. J Biol Chem. 2013 Oct 18;288(42):30659-71. doi: 10.1074/jbc.M113.477240. Epub2013 Sep 11. Europe PMC

Conformational plasticity of the essential membrane-associated mannosyltransferase PimA from mycobacteria. Giganti, D., Alegre-Cebollada, J., Urresti, S., Albesa-Jove, D., Rodrigo-Unzueta, A., Comino, N., Kachala, M., Lopez-Fernandez, S., Svergun, D.I., Fernandez, J.M. & Guerin, M.E. J Biol Chem. 2013 Oct 11;288(41):29797-808. doi: 10.1074/jbc.M113.462705. Epub2013 Aug 20. Europe PMC

Structural characterization of gephyrin by AFM and SAXS reveals a mixture of compact and extended states. Sander, B., Tria, G., Shkumatov, A.V., Kim, E.Y., Grossmann, J.G., Tessmer, I., Svergun, D.I. & Schindelin, H. Acta Crystallogr D Biol Crystallogr. 2013 Oct;69(Pt 10):2050-60. doi:10.1107/S0907444913018714. Epub 2013 Sep 20. Europe PMC

Reconstruction of quaternary structure from X-ray scattering by equilibrium mixtures of biological macromolecules. Petoukhov, M.V., Billas, I.M., Takacs, M., Graewert, M.A., Moras, D. & Svergun, D.I. Biochemistry. 2013 Oct 1;52(39):6844-55. doi: 10.1021/bi400731u. Epub 2013 Sep19. Europe PMC

Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS). Graewert, M.A. & Svergun, D.I. Curr Opin Struct Biol. 2013 Oct;23(5):748-54. doi: 10.1016/ 2013 Jul 5. Europe PMC

A structural model of PpoA derived from SAXS-analysis-implications for substrate conversion. Koch, C., Tria, G., Fielding, A.J., Brodhun, F., Valerius, O., Feussner, K., Braus, G.H., Svergun, D.I., Bennati, M. & Feussner, I. Biochim Biophys Acta. 2013 Sep;1831(9):1449-57. doi:10.1016/j.bbalip.2013.06.003. Epub 2013 Jun 21. Europe PMC

Using stable MutS dimers and tetramers to quantitatively analyze DNA mismatch recognition and sliding clamp formation. Groothuizen, F.S., Fish, A., Petoukhov, M.V., Reumer, A., Manelyte, L., Winterwerp, H.H., Marinus, M.G., Lebbink, J.H., Svergun, D.I., Friedhoff, P. & Sixma, T.K. Nucleic Acids Res. 2013 Sep;41(17):8166-81. doi: 10.1093/nar/gkt582. Epub 2013Jul 1. Europe PMC

Ferredoxin competes with bacterial frataxin in binding to the desulfurase IscS. Yan, R., Konarev, P.V., Iannuzzi, C., Adinolfi, S., Roche, B., Kelly, G., Simon, L., Martin, S.R., Py, B., Barras, F., Svergun, D.I. & Pastore, A. J Biol Chem. 2013 Aug 23;288(34):24777-87. doi: 10.1074/jbc.M113.480327. Epub2013 Jul 9. Europe PMC

Small Angle X-Ray and Neutron Scattering from Solutions of Biological Macromolecules. Svergun, D. I., Koch, M. H. J., Timmins, P. A. & May, R. P. International Union of Crystallography monographs on crystallography, vol. 19.

Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. Trewhella, J., Hendrickson, W.A., Kleywegt, G.J., Sali, A., Sato, M., Schwede, T., Svergun, D.I., Tainer, J.A., Westbrook, J. & Berman, H.M. Structure. 2013 Jun 4;21(6):875-81. doi: 10.1016/j.str.2013.04.020. Europe PMC

Structural insights into the mechanism of phosphoregulation of the retinoblastoma protein. Lamber, E.P., Beuron, F., Morris, E.P., Svergun, D.I. & Mittnacht, S. PLoS One. 2013;8(3):e58463. doi: 10.1371/journal.pone.0058463. Epub 2013 Mar 14. Europe PMC

Applications of small-angle X-ray scattering to biomacromolecular solutions. Petoukhov, M.V. & Svergun, D.I. Int J Biochem Cell Biol. 2013 Feb;45(2):429-37. doi:10.1016/j.biocel.2012.10.017. Epub 2012 Nov 9. Europe PMC

Comparative Characterization of Apo-, Reconstituted- and In Vivo-Folded forms of a Durum Wheat Metallothionein. Sayers, Z., Aydin, M., Bal, E., Yesilirmak, F., Konarev, P. V., Petoukhov, M. V., Roessle, M., Kikhney, A. G., Shang, W. & Svergun, D. I. Biophys J. 2013 Jan 29;104(2):396a. pii: S0006349512034558. doi:10.1016/j.bpj.2012.11.2209.

Quaternary structure of the yeast Arc1p-aminoacyl-tRNA synthetase complex in solution and its compaction upon binding of tRNAs. Koehler, C., Round, A., Simader, H., Suck, D. & Svergun, D. Nucleic Acids Res. 2013 Jan 1;41(1):667-76. doi: 10.1093/nar/gks1072. Epub 2012Nov 17. Europe PMC

The Molecular Basis of Iron-induced Oligomerization of Frataxin and the Role of the Ferroxidation Reaction in Oligomerization. Soderberg, C.A., Rajan, S., Shkumatov, A.V., Gakh, O., Schaefer, S., Ahlgren, E.C., Svergun, D.I., Isaya, G. & Al-Karadaghi, S. J Biol Chem. 2013 Mar 22;288(12):8156-67. doi: 10.1074/jbc.M112.442285. Epub 2013Jan 23. Europe PMC

Self-Assembly and Conformational Heterogeneity of the AXH Domain of Ataxin-1: An Unusual Example of a Chameleon Fold. de Chiara, C., Rees, M., Menon, R.P., Pauwels, K., Lawrence, C., Konarev, P.V., Svergun, D.I., Martin, S.R., Chen, Y.W. & Pastore, A. Biophys J. 2013 Mar 19;104(6):1304-13. doi: 10.1016/j.bpj.2013.01.048. Epub 2013Mar 19. Europe PMC

Quaternary structure of human, Drosophila melanogaster and Caenorhabditis elegans MFE-2 in solution from synchrotron small-angle X-ray scattering. Mehtala, M.L., Haataja, T.J., Blanchet, C.E., Hiltunen, J.K., Svergun, D.I. & Glumoff, T. FEBS Lett. 2013 Feb 14;587(4):305-10. doi: 10.1016/j.febslet.2012.12.014. Epub2013 Jan 8. Europe PMC

Structural Determinants and Mechanism of Mammalian CRM1 Allostery. Dolker, N., Blanchet, C.E., Voss, B., Haselbach, D., Kappel, C., Monecke, T., Svergun, D.I., Stark, H., Ficner, R., Zachariae, U., Grubmuller, H. & Dickmanns, A. Structure. 2013 Aug 6;21(8):1350-60. doi: 10.1016/j.str.2013.05.015. Epub 2013Jul 11. Europe PMC

Human IL-34 and CSF-1 establish structurally similar extracellular assemblies with their common hematopoietic receptor. Felix, J., Elegheert, J., Gutsche, I., Shkumatov, A.V., Wen, Y., Bracke, N., Pannecoucke, E., Vandenberghe, I., Devreese, B., Svergun, D.I., Pauwels, E., Vergauwen, B. & Savvides, S.N. Structure. 2013 Apr 2;21(4):528-39. doi: 10.1016/j.str.2013.01.018. Epub 2013 Mar7. Europe PMC

Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid. Nowak, E., Potrzebowski, W., Konarev, P.V., Rausch, J.W., Bona, M.K., Svergun, D.I., Bujnicki, J.M., Le Grice, S.F. & Nowotny, M. Nucleic Acids Res. 2013 Apr 1;41(6):3874-87. doi: 10.1093/nar/gkt053. Epub 2013Feb 4. Europe PMC

The Asymmetric Binding of PGC-1alpha to the ERRalpha and ERRgamma Nuclear Receptor Homodimers Involves a Similar Recognition Mechanism. Takacs, M., Petoukhov, M.V., Atkinson, R.A., Roblin, P., Ogi, F.X., Demeler, B., Potier, N., Chebaro, Y., Dejaegere, A., Svergun, D.I., Moras, D. & Billas, I.M. PLoS One. 2013 Jul 9;8(7):e67810. doi: 10.1371/journal.pone.0067810. Print 2013. Europe PMC

Ceruloplasmin: macromolecular assemblies with iron-containing acute phase proteins. Samygina, V.R., Sokolov, A.V., Bourenkov, G., Petoukhov, M.V., Pulina, M.O., Zakharova, E.T., Vasilyev, V.B., Bartunik, H. & Svergun, D.I. PLoS One. 2013 Jul 3;8(7):e67145. doi: 10.1371/journal.pone.0067145. Print 2013. Europe PMC

Small-angle X-ray scattering on biological macromolecules and nanocomposites in solution. Blanchet, C.E. & Svergun, D.I. Annu Rev Phys Chem. 2013;64:37-54. doi: 10.1146/annurev-physchem-040412-110132.Epub 2012 Dec 3. Europe PMC

Solution structure of CCP modules 10-12 illuminates functional architecture of the complement regulator, factor H. Makou, E., Mertens, H.D., Maciejewski, M., Soares, D.C., Matis, I., Schmidt, C.Q., Herbert, A.P., Svergun, D.I. & Barlow, P.N. J Mol Biol. 2012 Dec 14;424(5):295-312. doi: 10.1016/j.jmb.2012.09.013. Epub 2012Sep 25. Europe PMC

Structural and Functional Integration of the PLCgamma Interaction Domains Critical for Regulatory Mechanisms and Signaling Deregulation. Bunney, T.D., Esposito, D., Mas-Droux, C., Lamber, E., Baxendale, R.W., Martins, M., Cole, A., Svergun, D., Driscoll, P.C. & Katan, M. Structure. 2012 Dec 5;20(12):2062-75. doi: 10.1016/j.str.2012.09.005. Epub 2012Oct 11. Europe PMC

WeNMR: Structural Biology on the Grid. Wassenaar, T. A., van Dijk M., Loureiro-Ferreira N., van der Schot G., de Vries S. J., Schmitz C., van der Zwan J., Boelens R., Giachetti A., Ferella L., Rosato A., Bertini I., Herrmann T., Jonker H. R. A., Bagaria A., Jaravine V., Güntert P., Schwalbe H., VRANKEN W. F., Doreleijers J. F., Vriend G., Vuister G. W., d. Franke, a. Kikhney, Svergun D. I., Fogh R. H., o. Ionides J., Laue E. D., Spronk C., Jurkša S., Verlato M., Badoer S., Pra Dal S., Mazzucato M., Frizziero E. & Bonvin Amjj J. Grid. Comp. 2012. 10, 743-767. doi: 10.1007/s10723-012-9246-z.

Automated acquisition and analysis of small angle X-ray scattering data. Franke, D., Kikhney*, A.G. & Svergun, D.I. Nuclear Instruments & Methods in Physics Research Section a-Accelerators Spectrometers Detectors and Associated Equipment. 2012 Oct 10;689, 52-59. doi:10.1016/j.nima.2012.06.008
*Contributed equally to the work

A flexible multidomain structure drives the function of the urokinase-type plasminogen activator receptor (uPAR). Mertens, H.D., Kjaergaard, M., Mysling, S., Gardsvoll, H., Jorgensen, T.J., Svergun, D.I. & Ploug, M. J Biol Chem. 2012 Oct 5;287(41):34304-15. doi: 10.1074/jbc.M112.398404. Epub 2012Aug 15. Europe PMC

The PHD and chromo domains regulate the ATPase activity of the human chromatin remodeler CHD4. Watson, A.A., Mahajan, P., Mertens, H.D., Deery, M.J., Zhang, W., Pham, P., Du, X., Bartke, T., Zhang, W., Edlich, C., Berridge, G., Chen, Y., Burgess-Brown, N.A., Kouzarides, T., Wiechens, N., Owen-Hughes, T., Svergun, D.I., Gileadi, O. & Laue, E.D. J Mol Biol. 2012 Sep 7;422(1):3-17. doi: 10.1016/j.jmb.2012.04.031. Epub 2012 May7. Europe PMC

Structural flexibility of RNA as molecular basis for Hfq chaperone function. Ribeiro Ede A, J.r, Beich-Frandsen, M., Konarev, P.V., Shang, W., Vecerek, B., Kontaxis, G., Hammerle, H., Peterlik, H., Svergun, D.I., Blasi, U. & Djinovic-Carugo, K. Nucleic Acids Res. 2012 Sep;40(16):8072-84. Epub 2012 Jun 19. Europe PMC

Allosteric competitive inactivation of hematopoietic CSF-1 signaling by the viral decoy receptor BARF1. Elegheert, J., Bracke, N., Pouliot, P., Gutsche, I., Shkumatov, A.V., Tarbouriech, N., Verstraete, K., Bekaert, A., Burmeister, W.P., Svergun, D.I., Lambrecht, B.N., Vergauwen, B. & Savvides, S.N. Nat Struct Mol Biol. 2012 Sep;19(9):938-47. doi: 10.1038/nsmb.2367. Epub 2012 Aug19. Europe PMC

Structural insights into the regulatory mechanism of the response regulator RocR from Pseudomonas aeruginosa in cyclic Di-GMP signaling. Chen, M.W., Kotaka, M., Vonrhein, C., Bricogne, G., Rao, F., Chuah, M.L., Svergun, D., Schneider, G., Liang, Z.X. & Lescar, J. J Bacteriol. 2012 Sep;194(18):4837-46. doi: 10.1128/JB.00560-12. Epub 2012 Jun29. Europe PMC

Identification of an N-terminal inhibitory extension as the primary mechanosensory regulator of twitchin kinase. von Castelmur, E., Strumpfer, J., Franke, B., Bogomolovas, J., Barbieri, S., Qadota, H., Konarev, P.V., Svergun, D.I., Labeit, S., Benian, G.M., Schulten, K. & Mayans, O. Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13608-13. doi:10.1073/pnas.1200697109. Epub 2012 Aug 6. Europe PMC

Macromolecular HPMA-based nanoparticles with cholesterol for solid-tumor targeting: detailed study of the inner structure of a highly efficient drug delivery system. Filippov, S.K., Chytil, P., Konarev, P.V., Dyakonova, M., Papadakis, C., Zhigunov, A., Plestil, J., Stepanek, P., Etrych, T., Ulbrich, K. & Svergun, D.I. Biomacromolecules. 2012 Aug 13;13(8):2594-604. doi: 10.1021/bm3008555. Epub 2012Aug 1. Europe PMC

Ligand-binding properties and conformational dynamics of autolysin repeat domains in staphylococcal cell wall recognition. Zoll, S., Schlag, M., Shkumatov, A.V., Rautenberg, M., Svergun, D.I., Gotz, F. & Stehle, T. J Bacteriol. 2012 Aug;194(15):3789-802. doi: 10.1128/JB.00331-12. Epub 2012 May18. Europe PMC

High concentration formulation studies of an IgG2 antibody using small angle X-ray scattering. Mosbaek, C.R., Konarev, P.V., Svergun, D.I., Rischel, C. & Vestergaard, B. Pharm Res. 2012 Aug;29(8):2225-35. doi: 10.1007/s11095-012-0751-3. Epub 2012 Apr3. Europe PMC

MaxOcc: a web portal for maximum occurrence analysis. Bertini, I., Ferella, L., Luchinat, C., Parigi, G., Petoukhov, M.V., Ravera, E., Rosato, A. & Svergun, D.I. J Biomol NMR. 2012 Aug;53(4):271-80. Epub 2012 May 26. Europe PMC

Direct intracellular selection and biochemical characterization of a recombinant anti-proNGF single chain antibody fragment. Paoletti, F., Malerba, F., Konarev, P.V., Visintin, M., Scardigli, R., Fasulo, L., Lamba, D., Svergun, D.I. & Cattaneo, A. Arch Biochem Biophys. 2012 Jun 1;522(1):26-36. doi: 10.1016/ 2012 Apr 10. Europe PMC

Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution. Jacques, D.A., Guss, J.M., Svergun, D.I. & Trewhella, J. Acta Crystallogr D Biol Crystallogr. 2012 Jun;68(Pt 6):620-6. doi:10.1107/S0907444912012073. Epub 2012 May 17. Europe PMC

Solution structure of the natively assembled yeast ribosomal stalk determined by small-angle X-ray scattering. Grela, P., Gajda, M.J., Armache, J.P., Beckmann, R., Krokowski, D., Svergun, D.I., Grankowski, N. & Tchorzewski, M. Biochem J. 2012 Jun 1;444(2):205-9. doi: 10.1042/BJ20120115. Europe PMC

Conformational Analysis of a Genetically Encoded FRET Biosensor by SAXS. Mertens, H.D., Piljic, A., Schultz, C. & Svergun, D.I. Biophys J. 2012 Jun 20;102(12):2866-75. Epub 2012 Jun 19. Europe PMC

Instrumental setup for high-throughput small- and wide-angle solution scattering at the X33 beamline of EMBL Hamburg Blanchet, C.E., Zozulya, A.V., Kikhney, A.G., Franke, D., Konarev, P.V., Shang, W., Klaering, R., Robrahn, B., Hermes, C., Cipriani, F., Svergun, D.I. & Roessle, M. J. Appl. Cryst. (2012). 45, 489-495, doi:10.1107/S0021889812013490

The role of hydration in protein stability: comparison of the cold and heat unfolded states of Yfh1. Adrover, M., Martorell, G., Martin, S.R., Urosev, D., Konarev, P.V., Svergun, D.I., Daura, X., Temussi, P. & Pastore, A. J Mol Biol. 2012 Apr 13;417(5):413-24. doi: 10.1016/j.jmb.2012.02.002. Epub 2012Feb 14. Europe PMC

Crystal structure of Pseudomonas aeruginosa Tsi2 reveals a stably folded superhelical antitoxin. Zou, T., Yao, X., Qin, B., Zhang, M., Cai, L., Shang, W., Svergun, D.I., Wang, M., Cui, S. & Jin, Q. J Mol Biol. 2012 Apr 6;417(4):351-61. doi: 10.1016/j.jmb.2012.01.040. Epub 2012Jan 30. Europe PMC

Solution model of the intrinsically disordered polyglutamine tract-binding protein-1. Rees, M., Gorba, C., de Chiara, C., Bui, T.T., Garcia-Maya, M., Drake, A.F., Okazawa, H., Pastore, A., Svergun, D. & Chen, Y.W. Biophys J. 2012 Apr 4;102(7):1608-16. doi: 10.1016/j.bpj.2012.02.047. Epub 2012Apr 3. Europe PMC

Nonstructural proteins 7 and 8 of feline coronavirus form a 2:1 heterotrimer that exhibits primer-independent RNA polymerase activity. Xiao, Y., Ma, Q., Restle, T., Shang, W., Svergun, D.I., Ponnusamy, R., Sczakiel, G. & Hilgenfeld, R. J Virol. 2012 Apr;86(8):4444-54. doi: 10.1128/JVI.06635-11. Epub 2012 Feb 8. Europe PMC

New developments in the ATSAS program package for small-angle scattering data analysis M. V. Petoukhov, D. Franke, A. V. Shkumatov, G. Tria, A. G. Kikhney, M. Gajda, C. Gorba, H. D. T. Mertens, P. V. Konarev and D. I. Svergun J. Appl. Cryst. (2012). 45, 342-350, doi:10.1107/S0021889812007662

A flexible brace maintains the assembly of a hexameric replicative helicase during DNA unwinding. Whelan*, F., Stead*, J.A., Shkumatov*, A.V., Svergun, D.I., Sanders, C.M. & Antson, A.A. Nucleic Acids Res. 2012 Mar;40(5):2271-83. doi: 10.1093/nar/gkr906. Epub 2011 Nov8.
*equal contributors Europe PMC

The catalytic core of an archaeal 2-oxoacid dehydrogenase multienzyme complex is a 42-mer protein assembly. Marrott, N.L., Marshall, J.J., Svergun, D.I., Crennell, S.J., Hough, D.W., Danson, M.J. & van den Elsen, J.M. FEBS J. 2012 Mar;279(5):713-23. doi: 10.1111/j.1742-4658.2011.08461.x. Epub 2012Jan 19. Europe PMC

Ligand-induced formation of transient dimers of mammalian 12/15-lipoxygenase: a key to allosteric behavior of this class of enzymes? Ivanov, I., Shang, W., Toledo, L., Masgrau, L., Svergun, D.I., Stehling, S., Gomez, H., Di Venere, A., Mei, G., Lluch, J.M., Skrzypczak-Jankun, E., Gonzalez-Lafont, A. & Kuhn, H. Proteins. 2012 Mar;80(3):703-12. doi: 10.1002/prot.23227. Epub 2011 Dec 21. Europe PMC

Structural analysis of the C-terminal region (modules 18-20) of complement regulator factor H (FH). Morgan, H.P., Mertens, H.D., Guariento, M., Schmidt, C.Q., Soares, D.C., Svergun, D.I., Herbert, A.P., Barlow, P.N. & Hannan, J.P. PLoS One. 2012;7(2):e32187. doi: 10.1371/journal.pone.0032187. Epub 2012 Feb 28. Europe PMC

Tropoelastin bridge region positions the cell-interactive C terminus and contributes to elastic fiber assembly. Yeo, G.C., Baldock, C., Tuukkanen, A., Roessle, M., Dyksterhuis, L.B., Wise, S.G., Matthews, J., Mithieux, S.M. & Weiss, A.S. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2878-83. doi:10.1073/pnas.1111615108. Epub 2012 Feb 10. Europe PMC

Superhelical architecture of the myosin filament-linking protein myomesin with unusual elastic properties. Pinotsis, N., Chatziefthimiou, S.D., Berkemeier, F., Beuron, F., Mavridis, I.M., Konarev, P.V., Svergun, D.I., Morris, E., Rief, M. & Wilmanns, M. PLoS Biol. 2012 Feb;10(2):e1001261. doi: 10.1371/journal.pbio.1001261. Epub 2012Feb 14. Europe PMC

The Vibrio cholerae colonization factor GbpA possesses a modular structure that governs binding to different host surfaces. Wong, E., Vaaje-Kolstad, G., Ghosh, A., Hurtado-Guerrero, R., Konarev, P.V., Ibrahim, A.F., Svergun, D.I., Eijsink, V.G., Chatterjee, N.S. & van Aalten, D.M. PLoS Pathog. 2012 Jan;8(1):e1002373. doi: 10.1371/journal.ppat.1002373. Epub 2012Jan 12. Europe PMC

Structural analysis of intrinsically disordered proteins by small-angle X-ray scattering. Bernado, P. & Svergun, D.I. Mol Biosyst. 2012 Jan;8(1):151-67. Epub 2011 Sep 22. Europe PMC

Analysis of intrinsically disordered proteins by small-angle X-ray scattering. Bernado, P. & Svergun, D.I. Methods Mol Biol. 2012;896:107-22. doi: 10.1007/978-1-4614-3704-8_7. Europe PMC

Extracellular Complexes of the Hematopoietic Human and Mouse CSF-1 Receptor Are Driven by Common Assembly Principles. Elegheert, J., Desfosses, A., Shkumatov, A.V., Wu, X., Bracke, N., Verstraete, K., Van Craenenbroeck, K., Brooks, B.R., Svergun, D.I., Vergauwen, B., Gutsche, I. & Savvides, S.N. Structure. 2011 Dec 7;19(12):1762-1772. Europe PMC

A macrocyclic HCV NS3/4A protease inhibitor interacts with protease and helicase residues in the complex with its full-length target. Schiering, N., D'Arcy, A., Villard, F., Simic, O., Kamke, M., Monnet, G., Hassiepen, U., Svergun, D.I., Pulfer, R., Eder, J., Raman, P. & Bodendorf, U. Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21052-6. Epub 2011 Dec 12. Europe PMC

Oligomerization Propensity and Flexibility of Yeast Frataxin Studied by X-ray Crystallography and Small-Angle X-ray Scattering. Söderberg*, C.A., Shkumatov*, A.V., Rajan, S., Gakh, O., Svergun, D.I., Isaya, G. & Al-Karadaghi, S. J Mol Biol. 2011 Dec 16;414(5):783-97. Epub 2011 Oct 25.
*equal contributors Europe PMC

Structural and functional insights into a dodecameric molecular machine - the RuvBL1/RuvBL2 complex. Gorynia, S., Bandeiras, T.M., Pinho, F.G., McVey, C.E., Vonrhein, C., Round, A., Svergun, D.I., Donner, P., Matias, P.M. & Carrondo, M.A. J Struct Biol. 2011 Dec;176(3):279-91. Epub 2011 Sep 10. Europe PMC

Structure of the Lassa virus nucleoprotein revealed by X-ray crystallography, small-angle X-ray scattering, and electron microscopy. Brunotte, L., Kerber, R., Shang, W., Hauer, F., Hass, M., Gabriel, M., Lelke, M., Busch, C., Stark, H., Svergun, D.I., Betzel, C., Perbandt, M. & Gunther, S. J Biol Chem. 2011 Nov 4;286(44):38748-56. Epub 2011 Sep 14. Europe PMC

Insights into the molecular activation mechanism of the RhoA-specific guanine nucleotide exchange factor, PDZRhoGEF. Bielnicki*, J.A., Shkumatov*, A.V., Derewenda, U., Somlyo, A.V., Svergun, D.I. & Derewenda, Z.S. J Biol Chem. 2011 Oct 7;286(40):35163-75. Epub 2011 Aug 4.
*equal contributors Europe PMC

Solution structure of the soluble receptor for advanced glycation end products (sRAGE). Sarkany, Z., Ikonen, T.P., Ferreira-da-Silva, F., Saraiva, M.J., Svergun, D. & Damas, A.M. J Biol Chem. 2011 Oct 28;286(43):37525-34. Epub 2011 Aug 23. Europe PMC

Essential role of the metal-ion in the IPM-assisted domain closure of 3-isopropylmalate dehydrogenase. Graczer, E., Konarev, P.V., Szimler, T., Bacso, A., Bodonyi, A., Svergun, D.I., Zavodszky, P. & Vas, M. FEBS Lett. 2011 Oct 20;585(20):3297-302. Epub 2011 Sep 17. Europe PMC

Structural insights into the extracellular assembly of the hematopoietic Flt3 signaling complex. Verstraete, K., Vandriessche, G., Januar, M., Elegheert, J., Shkumatov, A.V., Desfosses, A., Van Craenenbroeck, K., Svergun, D.I., Gutsche, I., Vergauwen, B. & Savvides, S.N. Blood. 2011 Jul 7;118(1):60-8. Epub 2011 Mar 9. Europe PMC

Structural memory of natively unfolded tau protein detected by small-angle X-ray scattering. Shkumatov*, A.V., Chinnathambi, S., Mandelkow*, E. & Svergun, D.I. Proteins. 2011 Jul;79(7):2122-31. doi: 10.1002/prot.23033. Epub 2011 May10.
*Equal contributions Europe PMC

"4D Biology for health and disease" workshop report. Abrahams, J.P., Apweiler, R., Balling, R., Bertero, M.G., Bujnicki, J.M., Chayen, N.E., Chene, P., Corthals, G.L., Dylag, T., Forster, F., Heck, A.J., Henderson, P.J., Herwig, Ralf, Herwig, R., Jehenson, P., Kokalj, S.J., Laue, E., Legrain, P., Martens, L., Migliorini, C., Musacchio, A., Podobnik, M., Schertler, G.F., Schreiber, G., Sixma, T.K., Smit, A.B., Stuart, D., Svergun, D.I. & Taussig, M.J. N Biotechnol. 2011 Jul;28(4):291-3. Epub 2010 Oct 15. Europe PMC

Probing dimerization and structural flexibility of mammalian lipoxygenases by small-angle X-ray scattering. Shang, W., Ivanov, I., Svergun, D.I., Borbulevych, O.Y., Aleem, A.M., Stehling, S., Jankun, J., Kuhn, H. & Skrzypczak-Jankun, E. J Mol Biol. 2011 Jun 17;409(4):654-68. Epub 2011 Apr 20. Europe PMC

The structure of the unliganded extracellular domain of the interleukin-6 signal transducer gp130 in solution. Lorenzen, I., Shang, W., Perbandt, M., Petoukhov, M.V., Svergun, D.I., Waetzig, G.H., Rose-John, S., Hilgenfeld, R. & Grotzinger, J. Eur J Cell Biol. 2011 Jun-Jul;90(6-7):515-20. Epub 2010 Oct 30. Europe PMC

Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. Beich-Frandsen, M., Vecerek, B., Konarev, P.V., Sjoblom, B., Kloiber, K., Hammerle, H., Rajkowitsch, L., Miles, A.J., Kontaxis, G., Wallace, B.A., Svergun, D.I., Konrat, R., Blasi, U. & Djinovic-Carugo, K. Nucleic Acids Res. 2011 Jun;39(11):4900-15. Epub 2011 Feb 17. Europe PMC

Small-angle X-ray scattering study of a Rex family repressor: conformational response to NADH and NAD+ binding in solution. Wang, E., Ikonen, T.P., Knaapila, M., Svergun, D., Logan, D.T. & von Wachenfeldt, C. J Mol Biol. 2011 May 13;408(4):670-83. Epub 2011 Mar 21. Europe PMC

Common architecture of nuclear receptor heterodimers on DNA direct repeat elements with different spacings. Rochel, N., Ciesielski, F., Godet, J., Moman, E., Roessle, M., Peluso-Iltis, C., Moulin, M., Haertlein, M., Callow, P., Mely, Y., Svergun, D.I. & Moras, D. Nat Struct Mol Biol. 2011 May;18(5):564-70. Epub 2011 Apr 10. Europe PMC

Structural basis for engagement by complement factor H of C3b on a self surface. Morgan, H.P., Schmidt, C.Q., Guariento, M., Blaum, B.S., Gillespie, D., Herbert, A.P., Kavanagh, D., Mertens, H.D., Svergun, D.I., Johansson, C.M., Uhrin, D., Barlow, P.N. & Hannan, J.P. Nat Struct Mol Biol. 2011 Apr;18(4):463-70. Epub 2011 Feb 13. Europe PMC

The dimer interface of the membrane type 1 matrix metalloproteinase hemopexin domain: crystal structure and biological functions. Tochowicz, A., Goettig, P., Evans, R., Visse, R., Shitomi, Y., Palmisano, R., Ito, N., Richter, K., Maskos, K., Franke, D., Svergun, D., Nagase, H., Bode, W. & Itoh, Y. J Biol Chem. 2011 Mar 4;286(9):7587-600. Epub 2010 Dec 30. Europe PMC

Low-resolution structure of a vesicle disrupting α-synuclein oligomer that accumulates during fibrillation. Giehm, L., Svergun, D.I., Otzen, D.E. & Vestergaard, B. Proc Natl Acad Sci U S A. 2011 Feb 22;108(8):3246-51. Epub 2011 Feb 7. Europe PMC

Engineered synthetic virus-like particles and their use in vaccine delivery. Ghasparian, A., Riedel, T., Koomullil, J., Moehle, K., Gorba, C., Svergun, D.I., Perriman, A.W., Mann, S., Tamborrini, M., Pluschke, G. & Robinson, J.A. Chembiochem. 2011 Jan 3;12(1):100-9. Europe PMC

Structural characterization of the multidomain regulatory protein Rv1364c from Mycobacterium tuberculosis. King-Scott, J., Konarev, P.V., Panjikar, S., Jordanova, R., Svergun, D.I. & Tucker, P.A. Structure. 2011 Jan 12;19(1):56-69. Europe PMC

Structural studies on the enzyme complex isopropylmalate isomerase (LeuCD) from Mycobacterium tuberculosis. Manikandan, K., Geerlof, A., Zozulya, A.V., Svergun, D.I. & Weiss, M.S. Proteins. 2011 Jan;79(1):35-49. doi: 10.1002/prot.22856. Epub 2010 Oct 11. Europe PMC

A structural basis for Staphylococcal complement subversion: X-ray structure of the complement-binding domain of Staphylococcus aureus protein Sbi in complex with ligand C3d. Clark, E.A., Crennell, S., Upadhyay, A., Zozulya, A.V., Mackay, J.D., Svergun, D.I., Bagby, S. & van den Elsen, J.M. Mol Immunol. 2011 Jan;48(4):452-62. Epub 2010 Nov 4. Europe PMC

Hydrophilization of Magnetic Nanoparticles with Modified Alternating Copolymers. Part 2: Behavior in solution. Shtykova, E.V., Malyutin, A., Dyke, J., Stein, B., Konarev, P.V., Dragnea, B., Svergun, D.I. & Bronstein, L.M. J Phys Chem C Nanomater Interfaces. 2010 Dec 23;114(50):21908-21913. Europe PMC

Crystal structure of hexokinase KlHxk1 of Kluyveromyces lactis: a molecular basis for understanding the control of yeast hexokinase functions via covalent modification and oligomerization. Kuettner, E.B., Kettner, K., Keim, A., Svergun, D.I., Volke, D., Singer, D., Hoffmann, R., Muller, E.C., Otto, A., Kriegel, T.M. & Strater, N. J Biol Chem. 2010 Dec 24;285(52):41019-33. Epub 2010 Oct 12. Europe PMC

Hydrophilization of Magnetic Nanoparticles with Modified Alternating Copolymers. Part 1: The Influence of the Grafting. Bronstein, L.M., Shtykova, E.V., Malyutin, A., Dyke, J.C., Gunn, E., Gao, X., Stein, B., Konarev, P.V., Dragnea, B. & Svergun, D.I. J Phys Chem C Nanomater Interfaces. 2010 Dec 23;114(50):21900-21907. Europe PMC

Extensive small-angle X-ray scattering studies of blood coagulation factor VIIa reveal interdomain flexibility. Mosbaek, C.R., Nolan, D., Persson, E., Svergun, D.I., Bukrinsky, J.T. & Vestergaard, B. Biochemistry. 2010 Nov 16;49(45):9739-45. Epub 2010 Oct 20. Europe PMC

Recognition of nucleoplasmin by its nuclear transport receptor importin alpha/beta: insights into a complete import complex. Falces, J., Arregi, I., Konarev, P.V., Urbaneja, M.A., Svergun, D.I., Taneva, S.G. & Banuelos, S. Biochemistry. 2010 Nov 16;49(45):9756-69. Epub 2010 Oct 20. Europe PMC

The switch that does not flip: the blue-light receptor YtvA from Bacillus subtilis adopts an elongated dimer conformation independent of the activation state as revealed by a combined AUC and SAXS study. Jurk, M., Dorn, M., Kikhney, A., Svergun, D., Gartner, W. & Schmieder, P. J Mol Biol. 2010 Oct 15;403(1):78-87. doi: 10.1016/j.jmb.2010.08.036. Epub 2010Aug 25. Europe PMC

Structural characterization of protein-protein complexes by integrating computational docking with small-angle scattering data. Pons, C., D'Abramo, M., Svergun, D.I., Orozco, M., Bernado, P. & Fernandez-Recio, J. J Mol Biol. 2010 Oct 22;403(2):217-30. Epub 2010 Sep 8. Europe PMC

Structural bases for the interaction of frataxin with the central components of iron-sulphur cluster assembly. Prischi, F., Konarev, P.V., Iannuzzi, C., Pastore, C., Adinolfi, S., Martin, S.R., Svergun, D.I. & Pastore, A. Nat Commun. 2010 Oct;1(7):95. Europe PMC

Structural characterization of proteins and complexes using small-angle X-ray solution scattering. Mertens, H.D. & Svergun, D.I. J Struct Biol. 2010 Oct;172(1):128-41. Epub 2010 Jun 15. Europe PMC

The structure of the FnIII Tandem A77-A78 points to a periodically conserved architecture in the myosin-binding region of titin. Bucher, R.M., Svergun, D.I., Muhle-Goll, C. & Mayans, O. J Mol Biol. 2010 Sep 3;401(5):843-53. Epub 2010 Jun 11. Europe PMC

Conformational space of flexible biological macromolecules from average data. Bertini, I., Giachetti, A., Luchinat, C., Parigi, G., Petoukhov, M.V., Pierattelli, R., Ravera, E. & Svergun, D.I. J Am Chem Soc. 2010 Sep 29;132(38):13553-8. Europe PMC

Small-angle X-ray and neutron scattering as a tool for structural systems biology. Svergun, D.I. Biol Chem. 2010 Jul;391(7):737-43. Europe PMC

Structure and Dynamics of Ribosomal Protein L12: An Ensemble Model Based on SAXS and NMR Relaxation. Bernado, P., Modig, K., Grela, P., Svergun, D.I., Tchorzewski, M., Pons, M. & Akke, M. Biophys J. 2010 May 19;98(10):2374-82. Europe PMC

Four Distinct Structural Domains in Clostridium difficile Toxin B Visualized Using SAXS. Albesa-Jove, D., Bertrand, T., Carpenter, E.P., Swain, G.V., Lim, J., Zhang, J., Haire, L.F., Vasisht, N., Braun, V., Lange, A., von Eichel-Streiber, C., Svergun, D.I., Fairweather, N.F. & Brown, K.A. J Mol Biol. 2010 Mar 12;396(5):1260-1270. Epub 2010 Jan 11. Europe PMC

The central portion of factor H (modules 10-15) is compact and contains a structurally deviant CCP module. Schmidt, C.Q., Herbert, A.P., Mertens, H.D., Guariento, M., Soares, D.C., Uhrin, D., Rowe, A.J., Svergun, D.I. & Barlow, P.N. J Mol Biol. 2010 Jan 8;395(1):105-22. Epub 2009 Oct 14. Europe PMC

Quaternary structure of the human Cdt1-Geminin complex regulates DNA replication licensing. De Marco, V., Gillespie, P.J., Li, A., Karantzelis, N., Christodoulou, E., Klompmaker, R., van Gerwen, S., Fish, A., Petoukhov, M.V., Iliou, M.S., Lygerou, Z., Medema, R.H., Blow, J.J., Svergun, D.I., Taraviras, S. & Perrakis, A. Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19807-12. Epub 2009 Nov 11. Europe PMC

Metal-mediated self-assembly of a beta-sandwich protein. Crowley, P.B., Matias, P.M., Khan, A.R., Roessle, M. & Svergun, D.I. Chemistry. 2009 Nov 23;15(46):12672-80. Europe PMC

Large-scale movement of functional domains facilitates aminoacylation by human mitochondrial phenylalanyl-tRNA synthetase. Yadavalli, S.S., Klipcan, L., Zozulya, A., Banerjee, R., Svergun, D., Safro, M. & Ibba, M. FEBS Lett. 2009 Oct 6;583(19):3204-8. Epub 2009 Sep 6. Europe PMC

A mechanism for histone chaperoning activity of nucleoplasmin: thermodynamic and structural models. Taneva, S.G., Banuelos, S., Falces, J., Arregi, I., Muga, A., Konarev, P.V., Svergun, D.I., Velazquez-Campoy, A. & Urbaneja, M.A. J Mol Biol. 2009 Oct 23;393(2):448-63. Epub 2009 Aug 13. Europe PMC

The quaternary structure of amalgam, a Drosophila neuronal adhesion protein, explains its dual adhesion properties. Zeev-Ben-Mordehai, T., Mylonas, E., Paz, A., Peleg, Y., Toker, L., Silman, I., Svergun, D.I. & Sussman, J.L. Biophys J. 2009 Oct 21;97(8):2316-26. Europe PMC

The solution structure and dynamics of the DH-PH module of PDZRhoGEF in isolation and in complex with nucleotide-free RhoA. Cierpicki, T., Bielnicki, J., Zheng, M., Gruszczyk, J., Kasterka, M., Petoukhov, M., Zhang, A., Fernandez, E.J., Svergun, D.I., Derewenda, U., Bushweller, J.H. & Derewenda, Z.S. Protein Sci. 2009 Oct;18(10):2067-79. Europe PMC

The three-dimensional structure of diaminopimelate decarboxylase from Mycobacterium tuberculosis reveals a tetrameric enzyme organisation. Weyand, S., Kefala, G., Svergun, D.I. & Weiss, M.S. J Struct Funct Genomics. 2009 Sep;10(3):209-17. doi: 10.1007/s10969-009-9065-z.Epub 2009 Jun 19. Europe PMC

A common structural basis for pH- and calmodulin-mediated regulation in plant glutamate decarboxylase. Gut, H., Dominici, P., Pilati, S., Astegno, A., Petoukhov, M.V., Svergun, D.I., Grutter, M.G. & Capitani, G. J Mol Biol. 2009 Sep 18;392(2):334-51. Epub 2009 Jul 4. Europe PMC

Solution structure of human Pex5.Pex14.PTS1 protein complexes obtained by small angle X-ray scattering. Shiozawa, K., Konarev, P.V., Neufeld, C., Wilmanns, M. & Svergun, D.I. J Biol Chem. 2009 Sep 11;284(37):25334-42. Epub 2009 Jul 6. Europe PMC

Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin. Heikkinen, O.K., Ruskamo, S., Konarev, P.V., Svergun, D.I., Iivanainen, T., Heikkinen, S.M., Permi, P., Koskela, H., Kilpelainen, I. & Ylanne, J. J Biol Chem. 2009 Sep 11;284(37):25450-8. Epub 2009 Jul 21. Europe PMC

Insights into complement convertase formation based on the structure of the factor B-cobra venom factor complex. Janssen, B.J., Gomes, L., Koning, R.I., Svergun, D.I., Koster, A.J., Fritzinger, D.C., Vogel, C.W. & Gros, P. EMBO J. 2009 Aug 19;28(16):2469-78. Epub 2009 Jul 2. Europe PMC

Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution. Zanchi, D., Konarev, P.V., Tribet, C., Baron, A., Svergun, D.I. & Guyot, S. J Chem Phys. 2009 Jun 28;130(24):245103. Europe PMC

Structural and functional characterization of soluble endoglin receptor. Van Le, B., Franke, D., Svergun, D.I., Han, T., Hwang, H.Y. & Kim, K.K. Biochem Biophys Res Commun. 2009 Jun 12;383(4):386-91. Epub 2009 Mar 5. Europe PMC

Structural and biophysical characterization of the proteins interacting with the herpes simplex virus 1 origin of replication. Manolaridis, I., Mumtsidu, E., Konarev, P., Makhov, A.M., Fullerton, S.W., Sinz, A., Kalkhof, S., McGeehan, J.E., Cary, P.D., Griffith, J.D., Svergun, D., Kneale, G.G. & Tucker, P.A. J Biol Chem. 2009 Jun 12;284(24):16343-53. Epub 2009 Mar 27. Europe PMC

A crescent-shaped ALIX dimer targets ESCRT-III CHMP4 filaments. Pires, R., Hartlieb, B., Signor, L., Schoehn, G., Lata, S., Roessle, M., Moriscot, C., Popov, S., Hinz, A., Jamin, M., Boyer, V., Sadoul, R., Forest, E., Svergun, D.I., Gottlinger, H.G. & Weissenhorn, W. Structure. 2009 Jun 10;17(6):843-56. Europe PMC

Characterization of a fluorophore binding RNA aptamer by fluorescence correlation spectroscopy and small angle X-ray scattering. Werner, A., Konarev, P.V., Svergun, D.I. & Hahn, U. Anal Biochem. 2009 Jun 1;389(1):52-62. Epub 2009 Mar 20. Europe PMC

Intrinsic structural disorder of mouse proNGF. Paoletti, F., Covaceuszach, S., Konarev, P.V., Gonfloni, S., Malerba, F., Schwarz, E., Svergun, D.I., Cattaneo, A. & Lamba, D. Proteins. 2009 Jun;75(4):990-1009. Europe PMC

Interdomain flexibility in full-length matrix metalloproteinase-1 (MMP-1). Bertini, I., Fragai, M., Luchinat, C., Melikian, M., Mylonas, E., Sarti, N. & Svergun, D.I. J Biol Chem. 2009 May 8;284(19):12821-8. Epub 2009 Mar 12. Europe PMC

Structural insights into eRF3 and stop codon recognition by eRF1. Cheng, Z., Saito, K., Pisarev, A.V., Wada, M., Pisareva, V.P., Pestova, T.V., Gajda, M., Round, A., Kong, C., Lim, M., Nakamura, Y., Svergun, D.I., Ito, K. & Song, H. Genes Dev. 2009 May 1;23(9):1106-18. Europe PMC

A study of the ultrastructure of fragile-X-related proteins. Sjekloca, L., Konarev, P.V., Eccleston, J., Taylor, I.A., Svergun, D.I. & Pastore, A. Biochem J. 2009 Apr 15;419(2):347-57. Europe PMC

Low-resolution structures of transient protein-protein complexes using small-angle X-ray scattering. Blobel, J., Bernado, P., Svergun, D.I., Tauler, R. & Pons, M. J Am Chem Soc. 2009 Apr 1;131(12):4378-86. Europe PMC

Structural basis for sugar recognition, including the Tn carcinoma antigen, by the lectin SNA-II from Sambucus nigra. Maveyraud, L., Niwa, H., Guillet, V., Svergun, D.I., Konarev, P.V., Palmer, R.A., Peumans, W.J., Rouge, P., Van Damme, E.J., Reynolds, C.D. & Mourey, L. Proteins. 2009 Apr;75(1):89-103. Europe PMC

Structural characterization of unphosphorylated STAT5a oligomerization equilibrium in solution by small-angle X-ray scattering. Bernado, P., Perez, Y., Blobel, J., Fernandez-Recio, J., Svergun, D.I. & Pons, M. Protein Sci. 2009 Apr;18(4):716-26. Europe PMC

Molecular shape and prominent role of beta-strand swapping in organization of dUTPase oligomers. Takacs, E., Barabas, O., Petoukhov, M.V., Svergun, D.I. & Vertessy, B.G. FEBS Lett. 2009 Mar 4;583(5):865-71. Epub 2009 Feb 11. Europe PMC

Kinetic and mechanistic characterization of Mycobacterium tuberculosis glutamyl-tRNA synthetase and determination of its oligomeric structure in solution. Paravisi, S., Fumagalli, G., Riva, M., Morandi, P., Morosi, R., Konarev, P.V., Petoukhov, M.V., Bernier, S., Chenevert, R., Svergun, D.I., Curti, B. & Vanoni, M.A. FEBS J. 2009 Mar;276(5):1398-417. Europe PMC

Structural insights into the molecular organization of the S-layer from Clostridium difficile. Fagan, R.P., Albesa-Jove, D., Qazi, O., Svergun, D.I., Brown, K.A. & Fairweather, N.F. Mol Microbiol. 2009 Mar;71(5):1308-22. Epub 2009 Jan 29. Europe PMC

DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering. Franke, D. & Svergun, D.I. J. Appl. Cryst. 2009 42 342-346

A different conformation for EGC stator subcomplex in solution and in the assembled yeast V-ATPase: possible implications for regulatory disassembly. Diepholz, M., Venzke, D., Prinz, S., Batisse, C., Florchinger, B., Rossle, M., Svergun, D.I., Bottcher, B. & Fethiere, J. Structure. 2008 Dec 10;16(12):1789-98. Europe PMC

Automated sample-changing robot for solution scattering experiments at the EMBL Hamburg SAXS station X33. A. R. Round, D. Franke, S. Moritz, R. Huchler, M. Fritsche, D. Malthan, R. Klaering, D. I. Svergun, D. & M. Roessle. J. Appl. Cryst. 2008/10 41 913-917

Quaternary structure of flavorubredoxin as revealed by synchrotron radiation small-angle X-ray scattering. Petoukhov, M.V., Vicente, J.B., Crowley, P.B., Carrondo, M.A., Teixeira, M. & Svergun, D.I. Structure. 2008 Sep 10;16(9):1428-36. Europe PMC

Biophysical characterization of the unstructured cytoplasmic domain of the human neuronal adhesion protein neuroligin 3. Paz, A., Zeev-Ben-Mordehai, T., Lundqvist, M., Sherman, E., Mylonas, E., Weiner, L., Haran, G., Svergun, D.I., Mulder, F.A., Sussman, J.L. & Silman, I. Biophys J. 2008 Aug;95(4):1928-44. Epub 2008 May 2. Europe PMC

A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints. Gabel, F., Simon, B., Nilges, M., Petoukhov, M., Svergun, D. & Sattler, M. J Biomol NMR. 2008 Aug;41(4):199-208. Epub 2008 Aug 1. Europe PMC

Selective deuteration of tryptophan and methionine residues in maltose binding protein: a model system for neutron scattering. Laux, V., Callow, P., Svergun, D.I., Timmins, P.A., Forsyth, V.T. & Haertlein, M. Eur Biophys J. 2008 Jul;37(6):815-22. doi: 10.1007/s00249-008-0280-5. Epub 2008Feb 15. Europe PMC

Communication between the nucleotide site and the main molecular hinge of 3-phosphoglycerate kinase. Szabo, J., Varga, A., Flachner, B., Konarev, P.V., Svergun, D.I., Zavodszky, P. & Vas, M. Biochemistry. 2008 Jul 1;47(26):6735-44. Epub 2008 Jun 10. Europe PMC

Evidence for an elongated dimeric structure of heparin-binding hemagglutinin from Mycobacterium tuberculosis. Esposito, C., Pethoukov, M.V., Svergun, D.I., Ruggiero, A., Pedone, C., Pedone, E. & Berisio, R. J Bacteriol. 2008 Jul;190(13):4749-53. Epub 2008 Apr 25. Europe PMC

Characterization of Der p 21, a new important allergen derived from the gut of house dust mites. Weghofer, M., Dall'Antonia, Y., Grote, M., Stocklinger, A., Kneidinger, M., Balic, N., Krauth, M.T., Fernandez-Caldas, E., Thomas, W.R., van Hage, M., Vieths, S., Spitzauer, S., Horak, F., Svergun, D.I., Konarev, P.V., Valent, P., Thalhamer, J., Keller, W., Valenta, R. & Vrtala, S. Allergy. 2008 Jun;63(6):758-67. doi: 10.1111/j.1398-9995.2008.01647.x. Europe PMC

Evidence of reciprocal reorientation of the catalytic and hemopexin-like domains of full-length MMP-12. Bertini, I., Calderone, V., Fragai, M., Jaiswal, R., Luchinat, C., Melikian, M., Mylonas, E. & Svergun, D.I. J Am Chem Soc. 2008 Jun 4;130(22):7011-21. Epub 2008 May 9. Europe PMC

Structural Properties of AMP-activated Protein Kinase: DIMERIZATION, MOLECULAR SHAPE, AND CHANGES UPON LIGAND BINDING. Riek, U., Scholz, R., Konarev, P., Rufer, A., Suter, M., Nazabal, A., Ringler, P., Chami, M., Muller, S.A., Neumann, D., Forstner, M., Hennig, M., Zenobi, R., Engel, A., Svergun, D., Schlattner, U. & Wallimann, T. J Biol Chem. 2008 Jun 27;283(26):18331-43. Epub 2008 Mar 27. Europe PMC

Interaction of human complement with Sbi, a staphylococcal immunoglobulin-binding protein: indications of a novel mechanism of complement evasion by Staphylococcus aureus. Burman, J.D., Leung, E., Atkins, K.L., O'Seaghdha, M.N., Lango, L., Bernado, P., Bagby, S., Svergun, D.I., Foster, T.J., Isenman, D.E. & van den Elsen, J.M. J Biol Chem. 2008 Jun 20;283(25):17579-93. Epub 2008 Apr 22. Europe PMC

Structural basis for autoinhibition of ESCRT-III CHMP3. Lata, S., Roessle, M., Solomons, J., Jamin, M., Gottlinger, H.G., Svergun, D.I. & Weissenhorn, W. J Mol Biol. 2008 May 9;378(4):818-27. doi: 10.1016/j.jmb.2008.03.030. Epub 2008Mar 20. Europe PMC

Small Angle X-ray Studies Reveal That Aspergillus niger Glucoamylase Has a Defined Extended Conformation and Can Form Dimers in Solution. Jorgensen, A.D., Nohr, J., Kastrup, J.S., Gajhede, M., Sigurskjold, B.W., Sauer, J., Svergun, D.I., Svensson, B. & Vestergaard, B. J Biol Chem. 2008 May 23;283(21):14772-14780. Epub 2008 Mar 31. Europe PMC

Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy. Xu, X., Reinle, W., Hannemann, F., Konarev, P.V., Svergun, D.I., Bernhardt, R. & Ubbink, M. J Am Chem Soc. 2008 May 21;130(20):6395-403. Epub 2008 Apr 26. Europe PMC

Role of side-chains in the operation of the main molecular hinge of 3-phosphoglycerate kinase. Szabo, J., Varga, A., Flachner, B., Konarev, P.V., Svergun, D.I., Zavodszky, P. & Vas, M. FEBS Lett. 2008 Apr 16;582(9):1335-40. Epub 2008 Mar 20. Europe PMC

Absence of equilibrium cluster phase in concentrated lysozyme solutions. Shukla, A., Mylonas, E., Di Cola, E., Finet, S., Timmins, P., Narayanan, T. & Svergun, D.I. Proc Natl Acad Sci U S A. 2008 Apr 1;105(13):5075-80. Epub 2008 Mar 24. Europe PMC

The Subnanometer Resolution Structure of the Glutamate Synthase 1.2-MDa Hexamer by Cryoelectron Microscopy and Its Oligomerization Behavior in Solution: FUNCTIONAL IMPLICATIONS. Cottevieille, M., Larquet, E., Jonic, S., Petoukhov, M.V., Caprini, G., Paravisi, S., Svergun, D.I., Vanoni, M.A. & Boisset, N. J Biol Chem. 2008 Mar 28;283(13):8237-49. Epub 2008 Jan 16. Europe PMC

X-ray and neutron small-angle scattering analysis of the complex formed by the Met receptor and the Listeria monocytogenes invasion protein InlB. Niemann, H.H., Petoukhov, M.V., Hartlein, M., Moulin, M., Gherardi, E., Timmins, P., Heinz, D.W. & Svergun, D.I. J Mol Biol. 2008 Mar 21;377(2):489-500. Epub 2008 Jan 16. Europe PMC

Fab MOR03268 triggers absorption shift of a diagnostic dye via packaging in a solvent-shielded Fab dimer interface. Hillig, R.C., Urlinger, S., Fanghanel, J., Brocks, B., Haenel, C., Stark, Y., Sulzle, D., Svergun, D.I., Baesler, S., Malawski, G., Moosmayer, D., Menrad, A., Schirner, M. & Licha, K. J Mol Biol. 2008 Mar 14;377(1):206-19. Epub 2008 Jan 5. Europe PMC

Interaction between the C-terminal region of human myelin basic protein and calmodulin: analysis of complex formation and solution structure. Majava, V., Petoukhov, M.V., Hayashi, N., Pirila, P., Svergun, D.I. & Kursula, P. BMC Struct Biol. 2008 Feb 19;8:10. doi: 10.1186/1472-6807-8-10. Europe PMC

Human platelet 12-lipoxygenase, new findings about its activity, membrane binding and low-resolution structure. Aleem, A.M., Jankun, J., Dignam, J.D., Walther, M., Kuhn, H., Svergun, D.I. & Skrzypczak-Jankun, E. J Mol Biol. 2008 Feb 8;376(1):193-209. Epub 2007 Dec 4. Europe PMC

Interaction of human 3-phosphoglycerate kinase with l-ADP, the mirror image of d-ADP. Varga, A., Szabo, J., Flachner, B., Roy, B., Konarev, P., Svergun, D., Zavodszky, P., Perigaud, C., Barman, T., Lionne, C. & Vas, M. Biochem Biophys Res Commun. 2008 Feb 22;366(4):994-1000. Epub 2007 Dec 26. Europe PMC

Structural basis of dcp2 recognition and activation by dcp1. She, M., Decker, C.J., Svergun, D.I., Round, A., Chen, N., Muhlrad, D., Parker, R. & Song, H. Mol Cell. 2008 Feb 15;29(3):337-49. Europe PMC

Structural features of the single-stranded DNA-binding protein of Epstein-Barr virus. Mumtsidu, E., Makhov, A.M., Konarev, P.V., Svergun, D.I., Griffith, J.D. & Tucker, P.A. J Struct Biol. 2008 Feb;161(2):172-87. Epub 2007 Nov 1. Europe PMC

Molecular basis of the C-terminal tail-to-tail assembly of the sarcomeric filament protein myomesin. Pinotsis, N., Lange, S., Perriard, J.C., Svergun, D.I. & Wilmanns, M. EMBO J. 2008 Jan 9;27(1):253-64. Epub 2007 Dec 6. Europe PMC

A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain. von Castelmur, E., Marino, M., Svergun, D.I., Kreplak, L., Ucurum-Fotiadis, Z., Konarev, P.V., Urzhumtsev, A., Labeit, D., Labeit, S. & Mayans, O. Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1186-91. Epub 2008 Jan 22. Europe PMC

Solution structure of poly(ethylene) glycol-conjugated hemoglobin revealed by small-angle X-ray scattering: implications for a new oxygen therapeutic. Svergun, D.I., Ekstrom, F., Vandegriff, K.D., Malavalli, A., Baker, D.A., Nilsson, C. & Winslow, R.M. Biophys J. 2008 Jan 1;94(1):173-81. Epub 2007 Sep 7. Europe PMC

Low resolution structural models of the basic helix-loop-helix leucine zipper domain of upstream stimulatory factor 1 and its complexes with DNA from small angle X-ray scattering data. Lamber, E.P., Wilmanns, M. & Svergun, D.I. Biophys J. 2008 Jan 1;94(1):193-7. Epub 2007 Sep 7. Europe PMC

The structure of a full-length response regulator from Mycobacterium tuberculosis in a stabilized three-dimensional domain-swapped, activated state. King-Scott, J., Nowak, E., Mylonas, E., Panjikar, S., Roessle, M., Svergun, D.I. & Tucker, P.A. J Biol Chem. 2007 Dec 28;282(52):37717-29. Epub 2007 Oct 16. Europe PMC

Analysis of X-ray and neutron scattering from biomacromolecular solutions. Petoukhov, M.V. & Svergun, D.I. Curr Opin Struct Biol. 2007 Oct;17(5):562-71. Epub 2007 Aug 21. Europe PMC

The crystal and solution studies of glucosamine-6-phosphate synthase from Candida albicans. Raczynska, J., Olchowy, J., Konariev, P.V., Svergun, D.I., Milewski, S. & Rypniewski, W. J Mol Biol. 2007 Sep 21;372(3):672-88. Epub 2007 Jul 12. Europe PMC

Crystal structure and activity of Kunjin virus NS3 helicase; protease and helicase domain assembly in the full length NS3 protein. Mastrangelo, E., Milani, M., Bollati, M., Selisko, B., Peyrane, F., Pandini, V., Sorrentino, G., Canard, B., Konarev, P.V., Svergun, D.I., de Lamballerie, X., Coutard, B., Khromykh, A.A. & Bolognesi, M. J Mol Biol. 2007 Sep 14;372(2):444-55. Epub 2007 Jun 27. Europe PMC

Quaternary structures of tumor suppressor p53 and a specific p53 DNA complex. Tidow, H., Melero, R., Mylonas, E., Freund, S.M., Grossmann, J.G., Carazo, J.M., Svergun, D.I., Valle, M. & Fersht, A.R. Proc Natl Acad Sci U S A. 2007 Jul 24;104(30):12324-9. Epub 2007 Jul 9. Europe PMC

Structural characterization of flexible proteins using small-angle X-ray scattering. Bernado, P., Mylonas, E., Petoukhov, M.V., Blackledge, M. & Svergun, D.I. J Am Chem Soc. 2007 May 2;129(17):5656-64. Epub 2007 Apr 6. Europe PMC

Crystal structure of human filamin C domain 23 and small angle scattering model for filamin C 23-24 dimer. Sjekloca, L., Pudas, R., Sjoblom, B., Konarev, P., Carugo, O., Rybin, V., Kiema, T.R., Svergun, D., Ylanne, J. & Carugo, K.D. J Mol Biol. 2007 May 11;368(4):1011-23. Epub 2007 Feb 20. Europe PMC

A helical structural nucleus is the primary elongating unit of insulin amyloid fibrils. Vestergaard, B., Groenning, M., Roessle, M., Kastrup, J.S., van de Weert, M., Flink, J.M., Frokjaer, S., Gajhede, M. & Svergun, D.I. PLoS Biol. 2007 May;5(5):e134. Europe PMC

Plant transformation by Agrobacterium tumefaciens: modulation of single-stranded DNA-VirE2 complex assembly by VirE1. Frenkiel-Krispin, D., Wolf, S.G., Albeck, S., Unger, T., Peleg, Y., Jacobovitch, J., Michael, Y., Daube, S., Sharon, M., Robinson, C.V., Svergun, D.I., Fass, D., Tzfira, T. & Elbaum, M. J Biol Chem. 2007 Feb 9;282(6):3458-64. Epub 2006 Oct 23. Europe PMC

Structural characterization of the ribosomal P1A-P2B protein dimer by small-angle X-ray scattering and NMR spectroscopy. Grela, P., Helgstrand, M., Krokowski, D., Boguszewska, A., Svergun, D., Liljas, A., Bernado, P., Grankowski, N., Akke, M. & Tchorzewski, M. Biochemistry. 2007 Feb 20;46(7):1988-98. Epub 2007 Jan 30. Europe PMC

Molecular analysis and solution structure from small-angle X-ray scattering of the human natural killer inhibitory receptor IRp60 (CD300a). Dimasi, N., Roessle, M., Moran, O., Candiano, G., Svergun, D.I. & Biassoni, R. Int J Biol Macromol. 2007 Feb 20;40(3):193-200. Epub 2006 Jul 26. Europe PMC

Structural characterization of beta-sheeted oligomers formed on the pathway of oxidative prion protein aggregation in vitro. Redecke, L., von Bergen, M., Clos, J., Konarev, P.V., Svergun, D., Fittschen, U.E., Broekaert, J.A., Bruns, O., Georgieva, D., Mandelkow, E., Genov, N. & Betzel, C. J Struct Biol. 2007 Feb;157(2):308-20. Epub 2006 Jul 21. Europe PMC

The HC fragment of tetanus toxin forms stable, concentration-dependent dimers via an intermolecular disulphide bond. Qazi, O., Bolgiano, B., Crane, D., Svergun, D.I., Konarev, P.V., Yao, Z.P., Robinson, C.V., Brown, K.A. & Fairweather, N. J Mol Biol. 2007 Jan 5;365(1):123-34. Epub 2006 Sep 23. Europe PMC

Release factors 2 from Escherichia coli and Thermus thermophilus: structural, spectroscopic and microcalorimetric studies. Zoldak, G., Redecke, L., Svergun, D.I., Konarev, P.V., Voertler, C.S., Dobbek, H., Sedlak, E. & Sprinzl, M. Nucleic Acids Res. 2007;35(4):1343-53. Epub 2007 Feb 1. Europe PMC

Small-angle scattering studies of macromolecular solutions. Svergun, D.I. Journal of Applied Crystallography 2007 40 S10-S17

Structure and properties of iron oxide nanoparticles encapsulated by phospholipids with poly(ethylene glycol) tails. Shtykova, EV; Huang, XL; Remmes, N; Baxter, D; Stein, B; Dragnea, B; Svergun, D.; Bronstein, LM Journal of Physical Chemistry 2007 111 (49) 18078-11808

Upgrade of the small-angle X-ray scattering beamline X33 at the European Molecular Biology Laboratory, Hamburg. Roessle, M.W., Klaering, R., Ristau, U., Robrahn, B., Jahn, D., Gehrmann, T., Konarev, P., Round, A., Fiedler, S., Hermes, C. & Svergun, D. Journal of Applied Crystallography 2007 40, S190-S194

ATSAS 2.1 - towards automated and web-supported small-angle scattering data analysis. Petoukhov, M.V., Konarev, P.V., Kikhney, A.G. & Svergun, D.I. Journal of Applied Crystallography 2007 40 S223-S228

Flexible segments modulate co-folding of dUTPase and nucleocapsid proteins. Nemeth-Pongracz, V., Barabas, O., Fuxreiter, M., Simon, I., Pichova, I., Rumlova, M., Zabranska, H., Svergun, D., Petoukhov, M., Harmat, V., Klement, E., Hunyadi-Gulyas, E., Medzihradszky, K.F., Konya, E. & Vertessy, B.G. Nucleic Acids Res. 2007;35(2):495-505. Epub 2006 Dec 14. Europe PMC

Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering. Mylonas, E. & Svergun, D.I. Journal of Applied Crystallography 2007 40 S245-S249

Composite solid polymer electrolytes based on pluronics: Does ordering matter? Bronstein, LM; Karlinsey, RL; Yi, Z; Carini, J; Werner-Zwanziger, U; Konarev, PV; Svergun, D.; Sanchez, A; Khan, S Chem. Mater. 2007 19(25) 6258-6265

Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets. Alazard, R., Mourey, L., Ebel, C., Konarev, P.V., Petoukhov, M.V., Svergun, D.I. & Erard, M. Nucleic Acids Res. 2007;35(13):4420-32. Epub 2007 Jun 18. Europe PMC

Structure validation of the Josephin domain of ataxin-3: conclusive evidence for an open conformation. Nicastro, G., Habeck, M., Masino, L., Svergun, D.I. & Pastore, A. J Biomol NMR. 2006 Dec;36(4):267-77. Epub 2006 Nov 10. Europe PMC

The crystal and solution structures of glyceraldehyde-3-phosphate dehydrogenase reveal different quaternary structures. Ferreira-da-Silva, F., Pereira, P.J., Gales, L., Roessle, M., Svergun, D.I., Moradas-Ferreira, P. & Damas, A.M. J Biol Chem. 2006 Nov 3;281(44):33433-40. Epub 2006 Sep 7. Europe PMC

Monitoring intermediate filament assembly by small-angle x-ray scattering reveals the molecular architecture of assembly intermediates. Sokolova, A.V., Kreplak, L., Wedig, T., Mucke, N., Svergun, D.I., Herrmann, H., Aebi, U. & Strelkov, S.V. Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16206-11. Epub 2006 Oct 18. Europe PMC

The impact of protein characterization in structural proteomics. Geerlof, A., Brown, J., Coutard, B., Egloff, M.P., Enguita, F.J., Fogg, M.J., Gilbert, R.J., Groves, M.R., Haouz, A., Nettleship, J.E., Nordlund, P., Owens, R.J., Ruff, M., Sainsbury, S., Svergun, D.I. & Wilmanns, M. Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1125-36. Epub 2006Sep 19. Europe PMC

Multiple assembly states of lumazine synthase: a model relating catalytic function and molecular assembly. Zhang, X., Konarev, P.V., Petoukhov, M.V., Svergun, D.I., Xing, L., Cheng, R.H., Haase, I., Fischer, M., Bacher, A., Ladenstein, R. & Meining, W. J Mol Biol. 2006 Sep 29;362(4):753-70. Epub 2006 Jul 28. Europe PMC

Structural variations in the catalytic and ubiquitin-associated domains of microtubule-associated protein/microtubule affinity regulating kinase (MARK) 1 and MARK2. Marx, A., Nugoor, C., Muller, J., Panneerselvam, S., Timm, T., Bilang, M., Mylonas, E., Svergun, D.I., Mandelkow, E.M. & Mandelkow, E. J Biol Chem. 2006 Sep 15;281(37):27586-99. Epub 2006 Jun 27. Europe PMC

Joint use of small-angle X-ray and neutron scattering to study biological macromolecules in solution. Petoukhov, M.V. & Svergun, D.I. Eur Biophys J. 2006 Sep;35(7):567-576. Epub 2006 Apr 25. Europe PMC

The Ig doublet Z1Z2: a model system for the hybrid analysis of conformational dynamics in Ig tandems from titin. Marino, M., Zou, P., Svergun, D., Garcia, P., Edlich, C., Simon, B., Wilmanns, M., Muhle-Goll, C. & Mayans, O. Structure. 2006 Sep;14(9):1437-47. Europe PMC

Evidence for a dimeric assembly of two titin/telethonin complexes induced by the telethonin C-terminus. Pinotsis, N., Petoukhov, M., Lange, S., Svergun, D., Zou, P., Gautel, M. & Wilmanns, M. J Struct Biol. 2006 Aug;155(2):239-50. Epub 2006 Apr 27. Europe PMC

Structural and mutational analysis of substrate complexation by anthranilate phosphoribosyltransferase from Sulfolobus solfataricus. Marino, M., Deuss, M., Svergun, D.I., Konarev, P.V., Sterner, R. & Mayans, O. J Biol Chem. 2006 Jul 28;281(30):21410-21. Epub 2006 May 19. Europe PMC

Conformation of polypyrimidine tract binding protein in solution. Petoukhov, M.V., Monie, T.P., Allain, F.H., Matthews, S., Curry, S. & Svergun, D.I. Structure. 2006 Jun;14(6):1021-7. Europe PMC

Molecular insights into the self-assembly mechanism of dystrophia myotonica kinase. Garcia, P., Ucurum, Z., Bucher, R., Svergun, D.I., Huber, T., Lustig, A., Konarev, P.V., Marino, M. & Mayans, O. FASEB J. 2006 Jun;20(8):1142-51. Europe PMC

The C-terminal domain of the transcriptional corepressor CtBP is intrinsically unstructured. Nardini, M., Svergun, D., Konarev, P.V., Spano, S., Fasano, M., Bracco, C., Pesce, A., Donadini, A., Cericola, C., Secundo, F., Luini, A., Corda, D. & Bolognesi, M. Protein Sci. 2006 May;15(5):1042-50. Epub 2006 Apr 5. Europe PMC

The structural basis of signal transduction for the response regulator PrrA from Mycobacterium tuberculosis. Nowak, E., Panjikar, S., Konarev, P., Svergun, D.I. & Tucker, P.A. J Biol Chem. 2006 Apr 7;281(14):9659-66. Epub 2006 Jan 23. Europe PMC

Structural basis of hepatocyte growth factor/scatter factor and MET signalling. Gherardi, E., Sandin, S., Petoukhov, M.V., Finch, J., Youles, M.E., Ofverstedt, L.G., Miguel, R.N., Blundell, T.L., Vande Woude, G.F., Skoglund, U. & Svergun, D.I. Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):4046-51. Epub 2006 Mar 6. Europe PMC

Dimerisation and an increase in active site aromatic groups as adaptations to high temperatures: X-ray Solution scattering and substrate-bound crystal structures of Rhodothermus marinus endoglucanase Cel12A. Crennell, S.J., Cook, D., Minns, A., Svergun, D., Andersen, R.L. & Nordberg Karlsson, E. J Mol Biol. 2006 Feb 10;356(1):57-71. Epub 2005 Nov 22. Europe PMC

Structural and functional aspects of the sensor histidine kinase PrrB from Mycobacterium tuberculosis. Nowak, E., Panjikar, S., Morth, J.P., Jordanova, R., Svergun, D.I. & Tucker, P.A. Structure. 2006 Feb;14(2):275-85. Europe PMC

ATSAS 2.1, a program package for small-angle scattering data analysis. Konarev, P.V., Petoukhov, M.V., Volkov, V.V., Svergun, D.I. Journal of Applied Crystallography Part 2 2006 Apr;39: 277-286.

Hybrid polymer particles with a protective shell: Synthesis, structure, and templating. Bronstein, L.M., Dixit, S., Tomaszewski, J., Stein, B., Svergun, D., Konarev, P.V., Shtykova, E., Werner-Zwanziger, U., Dragnea, B. Chemistry of Materials 2006 May;18(9):2418-30.

The spatial structure of dendritic macromolecules. Ozerin, A.N., Svergun, D.I., Volkov, V.V., Kuklin, A.I., Gordelyi, V.I., Islamov, A.K., Ozerina, L.A. and Zavorotnyuk, D.S. Journal of Applied Crytallography 2005 Dec;38(Part 6):996-1003.

The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure. Vestergaard, B., Sanyal, S., Roessle, M., Mora, L., Buckingham, R.H., Kastrup, J.S., Gajhede, M., Svergun, D.I. & Ehrenberg, M. Mol Cell. 2005 Dec 22;20(6):929-38. Europe PMC

Poly-Ig tandems from I-band titin share extended domain arrangements irrespective of the distinct features of their modular constituents. Marino, M., Svergun, D.I., Kreplak, L., Konarev, P.V., Maco, B., Labeit, D. & Mayans, O. J Muscle Res Cell Motil. 2005 Dec 10;:1-11. Europe PMC

Metalated diblock and triblock poly(ethylene oxide)-block-poly(4-vinylpyridine) copolymers: understanding of micelle and bulk structure. Bronstein, L.M., Sidorov, S.N., Zhirov, V., Zhirov, D., Kabachii, Y.A., Kochev, S.Y., Valetsky, P.M., Stein, B., Kiseleva, O.I., Polyakov, S.N., Shtykova, E.V., Nikulina, E.V., Svergun, D.I. & Khokhlov, A.R. J Phys Chem B. 2005 Oct 13;109(40):18786-98. Europe PMC

X-ray snapshots of peptide processing in mutants of tricorn-interacting factor F1 from Thermoplasma acidophilum. Goettig, P., Brandstetter, H., Groll, M., Gohring, W., Konarev, P.V., Svergun, D.I., Huber, R. & Kim, J.S. J Biol Chem 2005 Sep 30;280(39):33387-96. Epub 2005 Jul 1. Europe PMC

Global rigid body modeling of macromolecular complexes against small-angle scattering data. Petoukhov, M.V. & Svergun, D.I. Biophys J 2005 Aug;89(2):1237-50. Epub 2005 May 27. Europe PMC

Solution X-ray scattering evidence for agonist- and antagonist-induced modulation of cleft closure in a glutamate receptor ligand-binding domain. Madden, D.R., Armstrong, N., Svergun, D., Perez, J. & Vachette, P. J Biol Chem. 2005 Jun 24;280(25):23637-42. Epub 2005 Mar 8. Europe PMC

Triticum durum metallothionein. Isolation of the gene and structural characterization of the protein using solution scattering and molecular modeling. Bilecen, K., Ozturk, U.H., Duru, A.D., Sutlu, T., Petoukhov, M.V., Svergun, D.I., Koch, M.H., Sezerman, U.O., Cakmak, I. & Sayers, Z. J Biol Chem 2005 Apr 8;280(14):13701-11. Epub 2005 Jan 4. Europe PMC

Synergistic use of synchrotron radiation techniques for biological samples in solution: a case study on protein-ligand recognition by the peroxisomal import receptor Pex5p. Stanley, W.A., Sokolova, A., Brown, A., Clarke, D.T., Wilmanns, M. & Svergun, D.I. J Synchrotron Radiat 2004 Nov 1;11(Pt 6):490-6. Epub 2004 Oct 22. Europe PMC

Structure and RNA interactions of the N-terminal RRM domains of PTB. Simpson, P.J., Monie, T.P., Szendroi, A., Davydova, N., Tyzack, J.K., Conte, M.R., Read, C.M., Cary, P.D., Svergun, D.I., Konarev, P.V., Curry, S. & Matthews, S. Structure (Camb) 2004 Sep;12(9):1631-43. Europe PMC

The crystal and solution structure of a putative transcriptional antiterminator from Mycobacterium tuberculosis. Morth, J.P., Feng, V., Perry, L.J., Svergun, D.I. & Tucker, P.A. Structure (Camb) 2004 Sep;12(9):1595-605. Europe PMC

Structural characterization of the nonameric assembly of an Archaeal alpha-L-fucosidase by synchrotron small angle X-ray scattering. Rosano, C., Zuccotti, S., Cobucci-Ponzano, B., Mazzone, M., Rossi, M., Moracci, M., Petoukhov, M.V., Svergun, D.I. & Bolognesi, M. Biochem Biophys Res Commun 2004 Jul 16;320(1):176-82. Europe PMC

Structural analysis of the stalk subunit Vma5p of the yeast V-ATPase in solution. Armbruster, A., Svergun, D.I., Coskun, U., Juliano, S., Bailer, S.M. & Gruber, G. FEBS Lett 2004 Jul 16;570(1-3):119-25. Europe PMC

Platinum nanoparticles generated in functionality-enhanced reaction media based on polyoctadecylsiloxane with long-chain functional modifiers. Shtykova, E.V., Svergun, D.I., Chernyshov, D.M., Khotina, I.A., Valetsky, P.M., Spontak, R.J. & Bronstein, L.M. J Phys Chem B. 2004 May 20;108(20):6175-85. doi: 10.1021/jp049336b. Europe PMC

Functional polymer colloids with ordered interior. Bronstein, L.M., Linton, C., Karlinsey, R., Stein, B., Timofeeva, G.I., Svergun, D.I., Konarev, P.I., Kozin, M., Tomaszewski, J., Werner-Zwanziger, U. & Zwanziger, J.W. Langmuir 2004 Feb 17;20(4):1100-10. Europe PMC

Conformational variability of nucleo-cytoplasmic transport factors. Fukuhara, N., Fernandez, E., Ebert, J., Conti, E. & Svergun, D. J Biol Chem 2004 Jan 16;279(3):2176-81. Epub 2003 Oct 15. Europe PMC

Ligand-Induced Conformational Changes in Thiamine Diphosphate–Dependent Enzymes (2004) König, S. et al. , in Comparison Between Crystal and Solution Structures. F.J.a.M.S. Patel, Editor 2003, CRC Press.

Ligand-induced conformational changes in thiamine diphosphate-dependent enzymes: comparison between crystal and solution structures. Konig, S., Spinka, M., Fiedler, E., Wille, G., Brauer, J., Koch, M.H.J. & Svergun, D. In "Thiamine. Catalytic mechanisms in normal and disease states", Jordan, F. & Patel, M.S. (Eds.), Marcel dekker Inc, new York, 2004, pp. 93-112.

Conformation of full-length Bruton tyrosine kinase (Btk) from synchrotron X-ray solution scattering. Marquez, J.A., Smith, C.I., Petoukhov, M.V., Lo Surdo, P., Mattsson, P.T., Knekt, M., Westlund, A., Scheffzek, K., Saraste, M. & Svergun, D.I. EMBO J 2003 Sep 15;22(18):4616-24. Europe PMC

Quaternary structure of Azospirillum brasilense NADPH-dependent glutamate synthase in solution as revealed by synchrotron radiation x-ray scattering. Petoukhov, M.V., Svergun, D.I., Konarev, P.V., Ravasio, S., van den Heuvel, R.H., Curti, B. & Vanoni, M.A. J Biol Chem. 2003 Aug 8;278(32):29933-9. Epub 2003 May 30. Europe PMC

The active conformation of glutamate synthase and its binding to ferredoxin. van den Heuvel, R.H., Svergun, D.I., Petoukhov, M.V., Coda, A., Curti, B., Ravasio, S., Vanoni, M.A. & Mattevi, A. J Mol Biol 2003 Jun 27;330(1):113-28. Europe PMC

Twists and turns: a tale of two shikimate-pathway enzymes. Brown, K.A., Carpenter, E.P., Watson, K.A., Coggins, J.R., Hawkins, A.R., Koch, M.H. & Svergun, D.I. Biochem Soc Trans 2003 Jun;31(Pt 3):543-7. Europe PMC

Studies on structure-function relationships of indolepyruvate decarboxylase from Enterobacter cloacae, a key enzyme of the indole acetic acid pathway. Schutz, A., Golbik, R., Tittmann, K., Svergun, D.I., Koch, M.H., Hubner, G. & Konig, S. Eur J Biochem 2003 May;270(10):2322-31. Europe PMC

Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution. Koch, M.H., Vachette, P. & Svergun, D.I. Q Rev Biophys 2003 May;36(2):147-227. Europe PMC

Low resolution structure determination shows procollagen C-proteinase enhancer to be an elongated multidomain glycoprotein. Bernocco, S., Steiglitz, B.M., Svergun, D.I., Petoukhov, M.V., Ruggiero, F., Ricard-Blum, S., Ebel, C., Geourjon, C., Deleage, G., Font, B., Eichenberger, D., Greenspan, D.S. & Hulmes, D.J. J Biol Chem 2003 Feb 28;278(9):7199-205. Europe PMC

Solution scattering suggests cross-linking function of telethonin in the complex with titin. Zou, P., Gautel, M., Geerlof, A., Wilmanns, M., Koch, M.H. & Svergun, D.I. J Biol Chem. 2003 Jan 24;278(4):2636-44. Epub 2002 Nov 20. Europe PMC

19 A solution structure of the filarial nematode immunomodulatory protein, ES-62. Ackerman, C.J., Harnett, M.M., Harnett, W., Kelly, S.M., Svergun, D.I. & Byron, O. Biophys J 2003 Jan;84(1):489-500. Europe PMC

Low-resolution structure of immunoglobulins IgG, IgM and rheumatoid factor IgM-RF from solution X-ray scattering data. Volkov, V.V., Lapuk, V.A., Kayushina, R.L., Shtykova, E.V., Varlamova, E.Yu., Malfois, M. & Svergun, D.I. J. Appl. Cryst. 2003 36 503-508

Uniqueness of ab initio shape determination in small-angle scattering. Volkov, V.V. & Svergun, D.I. J. Appl. Cryst. 2003 36(3 No. 1) 860-864

Solution structures of immunoglubulins IgG and IgM and rheumatoid factor IgM-RF. Volkov, V. V., Kayushina, R. L., Lapuk, V. A., Shtykova, E. V., Varlamova, E. Yu., Malfois, M. & Svergun, D. I Kristallographia 2003 48 98-105

Looking behind the beamstop: X-ray solution scattering studies of structure and conformational changes of biological macromolecules. Vachette, P., Koch, M.H. & Svergun, D.I. Methods Enzymol 2003;374:584-615. Europe PMC

Small-angle scattering studies of biological macromolecules in solution. Svergun, D.I. & Koch, M.H.J. Rep Prog Phys 2003 66(10) 1735-1782

Small-angle X-ray scattering reveals hollow nanostructures in - and -carrageenan/surfactant complexes. Shtykova, E.V., Shtykova, E.V., Jr., Volkov, V.V., Konarev, P.V., Dembo., A.T., Makhaeva, E.E., Ronova, I.A., Khokhlov, A.R., Reynaers, H. & Svergun, D.I J. Appl. Cryst. 2003 36(3 No. 1) 669-673

New methods for domain structure determination of proteins from solution scattering data. Petoukhov, M.V. & Svergun, D.I. J. Appl. Cryst. 2003 36(3 No. 1) 540-544

Structural characterization of T-protein of the Escherichia coli glycine cleavage system by X-ray small angle scattering. Orun, O., Koch, M.H., Kan, B., Svergun, D.I., Petoukhov, M.V. & Sayers, Z. Cell Mol Biol (Noisy-le-grand). 2003;49 Online Pub:OL453-9. Europe PMC

PRIMUS: a Windows PC-based system for small-angle scattering data analysis. Konarev, P.V., Volkov, V.V., Sokolova, A.V., Koch, M.H.J. & Svergun, D.I. J. Appl. Cryst. 2003 36(5) 1277-1282

Controlled synthesis of novel metalated poly(aminohexyl)-(aminopropyl)silsesquioxane colloids. Bronstein, L.M., Linton, C.N., Karlinsey, R., Ashcraft, E. Stein, B.D., Svergun, D.I., Kozin, M., Khotina, I.A., Spontak, R.J., Werner-Zwanziger, U. & Zwanziger, J.W. Langmuir 2003 19(17) 7071 -77083

Addition of missing loops and domains to protein models by x-ray solution scattering. Petoukhov, M.V., Eady, N.A., Brown, K.A. & Svergun, D.I. Biophys J 2002 Dec;83(6):3113-25. Europe PMC

A key structural role for active site type 3 copper ions in human ceruloplasmin. Vachette, P., Dainese, E., Vasyliev, V.B., Di Muro, P., Beltramini, M., Svergun, D.I., De Filippis, V. & Salvato, B. J Biol Chem 2002 Oct 25;277(43):40823-31. Europe PMC

Advances in structure analysis using small-angle scattering in solution. Svergun, D.I. & Koch, M.H. Curr Opin Struct Biol 2002 Oct;12(5):654-60. Europe PMC

Insights into signal transduction revealed by the low resolution structure of the FixJ response regulator. Birck, C., Malfois, M., Svergun, D. & Samama, J. J Mol Biol 2002 Aug 16;321(3):447-57. Europe PMC

Solution structure of bacteriophage PRD1 vertex complex. Sokolova, A., Malfois, M., Caldentey, J., Svergun, D.I., Koch, M.H., Bamford, D.H. & Tuma, R. J Biol Chem 2001 Dec 7;276(49):46187-95. Europe PMC

Conformation of the Drosophila motor protein non-claret disjunctional in solution from X-ray and neutron scattering. Svergun, D.I., Zaccai, G., Malfois, M., Wade, R.H., Koch, M.H. & Kozielski, F. J Biol Chem 2001 Jul 6;276(27):24826-32. Europe PMC

Determination of domain structure of proteins from x-ray solution scattering. Svergun, D.I., Petoukhov, M.V. & Koch, M.H. Biophys J 2001 Jun;80(6):2946-53. Europe PMC

A novel quaternary structure of the dimeric alpha-crystallin domain with chaperone-like activity. Feil, I.K., Malfois, M., Hendle, J., van Der Zandt, H. & Svergun, D.I. J Biol Chem 2001 Apr 13;276(15):12024-9. Europe PMC

Structural insights into the A1 ATPase from the archaeon, Methanosarcina mazei Go1. Gruber, G., Svergun, D.I., Coskun, U., Lemker, T., Koch, M.H., Schagger, H. & Muller, V. Biochemistry 2001 Feb 20;40(7):1890-6. Europe PMC

The overall conformation of conventional kinesins studied by small angle X-ray and neutron scattering. Kozielski, F., Svergun, D., Zaccai, G., Wade, R.H. & Koch, M.H. J Biol Chem 2001 Jan 12;276(2):1267-1275 Europe PMC

Small-angle X-ray scattering study of the structure of self-organized polymer matrices and formation of imbedded metal nanoparticles. Svergun, D.I., Shtykova, E.V., Kozin, M.B., Volkov, V.V., Konarev, P.V.,Dembo, A.T., Shtykova, E.V., Jr., Bronstein, L.M., Chernyshov, D.M.,Platonova, O.A., Yakunin, A. N., Valetsky, P.M. & Khokhlov, A.R. Crystallography Reports 2001 46(4) 586-592

Automated matching of high- and low-resolution structural models. Kozin, M.B. & Svergun, D.I. J. Appl. Cryst. (2001). 34 (1), 33-41

MASSHA - a graphic system for rigid body modelling of macromolecular complexes against solution scattering data. Konarev, P.V., Petoukhov, M.V. & Svergun, D.I. J. Appl. Crystallogr. (2001), 34 (4), 527-532.

Metal nanoparticle formation in polyelectrolyte gels with regular microstructures. Bronstein, L. M., Svergun, D. I. & Khokhlov, A. R. Polymer Gels and Networks 2001 103-130

Structure of free thermus flavus 5 S rRNA at 1.3 nm resolution from synchrotron X-ray solution scattering. Funari, S.S., Rapp, G., Perbandt, M., Dierks, K., Vallazza, M., Betzel, C., Erdmann, V.A. & Svergun, D.I. J Biol Chem 2000 Oct 6;275(40):31283-8 Europe PMC

Solution structure and conformational changes of the Streptomyces chitin-binding protein (CHB1). Svergun, D.I., Becirevic, A., Schrempf, H., Koch, M.H. & Gruber, G. Biochemistry 2000 Sep 5;39(35):10677-83 Europe PMC

Evidence for major structural changes in the manduca sexta midgut V1 ATPase due to redox modulation. A small angle x-ray scattering study. Gruber, G., Svergun, D.I., Godovac-Zimmermann, J., Harvey, W.R., Wieczorek, H. & Koch, M.H. J Biol Chem 2000 Sep 29;275(39):30082-7 Europe PMC

A map of protein-rRNA distribution in the 70 S Escherichia coli ribosome. Svergun, D.I. & Nierhaus, K.H. J Biol Chem 2000 May 12;275(19):14432-9 Europe PMC

Solution structure of the E. coli 70S ribosome at 11.5 A resolution. Gabashvili, I.S., Agrawal, R.K., Spahn, C.M., Grassucci, R.A., Svergun, D.I., Frank, J. & Penczek, P. Cell 2000 Mar 3;100(5):537-49 Europe PMC

Low resolution structure of the sigma54 transcription factor revealed by X-ray solution scattering. Svergun, D.I., Malfois, M., Koch, M.H., Wigneshweraraj, S.R. & Buck, M. J Biol Chem 2000 Feb 11;275(6):4210-4 Europe PMC

Crystal versus solution structures of thiamine diphosphate-dependent enzymes. Svergun, D.I., Petoukhov, M.V., Koch, M.H. & Konig, S. J Biol Chem 2000 Jan 7;275(1):297-302 Europe PMC

Low-resolution structure of the proteolytic fragments of the Rapana venosa hemocyanin in solution. Dainese, E., Svergun, D., Beltramini, M., Di Muro, P. & Salvato, B. Arch Biochem Biophys 2000 Jan 1;373(1):154-62 Europe PMC

Small-angle X-ray scattering by solutions of biological macromolecules. Vachette, P. & Svergun, D.I. In "Structure and Dynamics of Biomolecules", Fanchon, E., Geissler, G., Hodeau , J.-L., Regnard, J.-R. & Timmins, P.A. (eds.), New York: Oxford University Press, pp. 199-237

Small-angle X-ray scattering study of platinum-containing hydrogel/surfactant complexes. Svergun, D.I., Shtykova, E.V., Kozin, M.B., Volkov, V.V., Dembo, A.T., Shtykova, E.V. Jr., Bronstein, L.M., Platonova, O.A., Yakunin, A.N., Valetsky, P.M. & Khokhlov, A.R. J. Phys. Chem. Sec. B 2000 104 5242-5250

Formation of metal nanoparticles in multilayered poly(octadecylsiloxane) as revealed by anomalous small-angle X-ray scattering. Svergun, D.I., Kozin, M.B., Konarev, P.V, Shtykova, E.V., Volkov, V.V., Chernyshov, D.M., Valetsky, P.M. & Bronstein, L.M. Chem. Mater. 2000 12(12) 3552-3560

A small angle x-ray scattering study of the droplet-cylinder transition in oil-rich sodium bis(2-ethylhexyl) sulfosuccinate microemulsions. Svergun, D.I., Konarev, P.V., Volkov, V.V., Koch, M.H.J., W.F.C. Sager, J. Smeets & E.M. Blokhuis J. Chem. Phys. 2000 113 1651-1665

Advanced solution scattering data analysis methods and their applications. Svergun, D.I. J. Appl. Crystallogr. 2000 33 530-534

SasCIF: an extension of core Crystallographic Information File for small angle scattering Malfois, M. & Svergun, D.I. J. Appl. Crystallogr. 2000 812-816

Structural studies of the 30S subunit of ribosomes Thermus thermophilus by small-angle neutron and X-ray scattering. Lixin Fan, Svergun, D.I., Volkov, V.V., Aksenov, V.L., Agalarov, C.Ch., Selivanova, O.M., Shcherbakova, I.N., Koch, M., Gilles, R., Wiedenmann, A., May, R. & Serdyuk, I.N. J. Appl. Crystallogr. 2000 33 515-518

A software system for automated and interactive rigid body modeling of solution scattering data. Kozin, M.B. & Svergun, D.I. J. Appl. Crystallogr. 2000 33 775-777

Structure of a beheaded 30 S ribosomal subunit from Thermus thermophilus. Serdyuk, I., Ulitin, A., Kolesnikov, I., Vasiliev, V., Aksenov, V., Zaccai, G., Svergun, D., Kozin, M. & Willumeit, R. J Mol Biol 1999 Sep 24;292(3):633-9 Europe PMC

A molecular envelope of the ligand-binding domain of a glutamate receptor in the presence and absence of agonist. Abele, R., Svergun, D., Keinanen, K., Koch, M.H. & Madden, D.R. Biochemistry 1999 Aug 24;38(34):10949-57 Europe PMC

Nonaggregating mutant of recombinant human hexokinase I exhibits wild- type kinetics and rod-like conformations in solution. Aleshin, A.E., Malfois, M., Liu, X., Kim, C.S., Fromm, H.J., Honzatko, R.B., Koch, M.H. & Svergun, D.I. Biochemistry 1999 Jun 29;38(26):8359-66 Europe PMC

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Svergun, D.I. Biophys J 1999 Jun;76(6):2879-86 Europe PMC

Biochemical and structural characterization of recombinant copper- metallothionein from Saccharomyces cerevisiae. Sayers, Z., Brouillon, P., Svergun, D.I., Zielenkiewicz, P. & Koch, M.H. Eur J Biochem 1999 Jun;262(3):858-65 Europe PMC

A synchrotron radiation X-ray scattering study of aqueous solutions of native DNA. Barone, G., Sayers, Z., Svergun, D.I. and Koch, M.H.J. J. Synchr. Rad. 1999 6 1031-1034

A model of the quaternary structure of the Escherichia coli F1 ATPase from X-ray solution scattering and evidence for structural changes in the delta subunit during ATP hydrolysis. Svergun, D.I., Aldag, I., Sieck, T., Altendorf, K., Koch, M.H., Kane, D.J., Kozin, M.B. & Gruber, G. Biophys J 1998 Nov 75(5) 2212-2219 Europe PMC

Escherichia coli SecA shape and dimensions. Shilton, B., Svergun, D.I., Volkov, V.V., Koch, M.H., Cusack, S. & Economou, A. FEBS Lett 1998 Oct 2 436(2) 277-282 Europe PMC

Evidence for a major structural change in Escherichia coli chorismate synthase induced by flavin and substrate binding. Macheroux, P., Schonbrunn, E., Svergun, D.I., Volkov, V.V., Koch, M.H., Bornemann, S. & Thorneley, R.N. Biochem J 1998 Oct 15 335 ( Pt 2) 319-327 Europe PMC

Solution structure of the ternary complex between aminoacyl-tRNA, elongation factor Tu, and guanosine triphosphate. Bilgin, N., Ehrenberg, M., Ebel, C., Zaccai, G., Sayers, Z., Koch, M.H., Svergun, D.I., Barberato, C., Volkov, V., Nissen, P. & Nyborg, J. Biochemistry 1998 Jun 2;37(22):8163-72. Europe PMC

Studies on the conformational changes in the bacterial cell wall biosynthetic enzyme UDP-N-acetylglucosamine enolpyruvyltransferase (MurA). Schonbrunn, E., Svergun, D.I., Amrhein, N. & Koch, M.H. Eur J Biochem 1998 Apr 15 253(2) 406-412 Europe PMC

Small-angle X-ray solution-scattering studies on ligand-induced subunit interactions of the thiamine diphosphate dependent enzyme pyruvate decarboxylase from different organisms. Konig, S., Svergun, D.I., Volkov, V.V., Feigin, L.A. & Koch, M.H. Biochemistry 1998 Apr 14;37(15):5329-34 Europe PMC

Protein hydration in solution: experimental observation by x-ray and neutron scattering. Svergun, D.I., Richard, S., Koch, M.H., Sayers, Z., Kuprin, S. & Zaccai, G. Proc Natl Acad Sci U S A 1998 Mar 3 95(5) 2267-2272 Europe PMC

Automated particle shape determination using small-angle scattering from monodisperse systems. Svergun, D.I., Volkov, V.V. & Kozin, M.B. Powerhnost? (Surface), in Russian

Size distributions of metal nanoparticles in polyelectrolyte gels. Svergun, D.I., Shtykova, E.V., Dembo, A.T., Bronstein, L.M., Platonova, O.A., Yakunin, A.N., Valetsky, P.M. & Khokhlov, A.R. J. Chem. Phys. 1998 109(24) 11109-11111

Large differences are observed between the crystal and solution quaternary structures of allosteric aspartate transcarbamylase in the R state. Svergun, D.I., Barberato, C., Koch, M.H., Fetler, L. & Vachette, P. Proteins 1997 Jan 27(1) 110-117 Europe PMC

CRYSOL – a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates. Svergun, D.I., Barberato, C. & Koch, M.H.J. Journal of Applied Crystallography 1995 28 768-773

Determination of the regularization parameter in indirect-transform methods using perceptual criteria. Svergun, D.I. Journal of Applied Crystallography 1992 25(4) 495-503