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EMBO Course - Programme
Lectures and tutorials will take place in the HASYLAB seminar room, Building 25b
| Day 1 : X-ray scattering and instrumentation (Wed, 5 Sep.) | |
|---|---|
| 08:45-09:00 | Introduction - D. Svergun (.pdf file(373 kB)) |
| 09:00-09:50 | Solution scattering: an overview - H.Stuhrmann (.pdf file (393 kB)) |
| 09:50-10:10 | Coffee break |
| 10:10-12:00 | Scattering of X-rays (basics) - P.Vachette (.pdf file (5.9 MB)) |
| 12:30-13:30 | Lunch, DESY Bistro, Building 9a |
| 14:00-15:00 | Basic numerical and statistical methods - V.Volkov (.pdf file (928 kB)) |
| 15:00-17:00 | Visit of the EMBL solution scattering beamline at HASYLAB |
| 17:00-17:30 | Coffee break |
| 17:30-19:30 | Student presentations (10 min each) |
| 20:00-22:00 | Welcome dinner |
| Day 2 : Data processing (Thu, 6 Sep.) | |
| 09:00-09:50 | X-ray data reduction and processing - D. Svergun (.pdf file (1.7 MB)) |
| 09:50-10:40 | X-ray optics and detectors - W. Bras (.pdf file (1 MB)) |
| 10:40-11:00 | Coffee break |
| 11:00-12:00 | Indirect transformation method - O.Glatter (.pdf file (792 KB)) |
| 12:30-13:30 | Lunch, DESY Bistro, Building 9a |
| 14:00-15:00 | ITP program tutorial - O.Glatter |
| 15:00-16:00 | GNOM program tutorial - D.Svergun |
| 16:00-16:30 | Comparison of indirect transformation methods - T. Fujisawa (.pdf file (188 KB)) Available tools to download :
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| 16:30-17:00 | Coffee break |
| 17:00-19:00 | Students presentations (10 min each) |
| 19:00-19:45 | Supper on the DESY site |
| 19:45-21:30 | ITP/GNOM practicals |
| Day 3 : Neutron scattering and instrumentation (Fri, 7 Sep.) (The session will take place at the GKSS research reactor in Geesthacht) | |
| 08:00 | Meeting point at DESY side entrance (Luruper Chaussee) |
| 08:00-09:30 | Bus transportation to the GKSS Research Center |
| 09:30-10:00 | Welcome |
| 10:00-12:00 | Neutron scattering (basics) - J.Zaccai |
| 12:00-13:30 | Lunch |
| 13:30-15:00 | Neutron instrumentation, data reduction - R.Willumeit |
| 15:00-16:30 | Visit of the experimental hall at the research reactor FRG-1 |
| 16:30-17:00 | Coffee break |
| 17:00-19:00 | Spin-dependent neutron scattering and the ribosome - H.Stuhrmann, R.Willumeit |
| 19:00-19:30 | Coffee/snacks and concluding remarks |
| 19:30-21:00 | Bus transportation from GKSS to DESY |
| Day : 4 Ab initio methods (Sat, 8 Sep.) | |
| 09:00-09:50 | Ab initio approaches: resolution and uniqueness - D.Svergun (.pdf file (7.9 MB)) |
| 09:50-10:40 | Shape determination using a genetic algorithm - F.Diaz (.pdf file (4.9 MB)) |
| 10:40-11:00 | Coffee break |
| 11:00-12:00 | Program DALAI_GA tutorial - F.Diaz |
| 12:30-13:30 | Lunch, DESY Bistro, Building 9a |
| 14:00-14:45 | Program SASHA tutorial - V.Volkov (.pdf file (633 KB)) |
| 14:45-15:45 | Programs DAMMIN/GASBOR tutorial - D.Svergun, M.Petoukhov) |
| 15:45-16:30 | Comparison of ab initio methods - T. Fujisawa (.pdf file (1.4 MB)) videos.zip (53 Mb) - Animation videos that can optionally be downloaded to animate the .pdf file. Unpack this zip file in the same directory as the .pdf file and by double clicking on a picture the animation video starts. |
| 16:30-17:00 | Coffee break |
| 17:00-19:00 | Shape determination: applications to proteins - S. Koenig, K.Brown, S.Doniach |
| 19:00-19:45 | Supper on the DESY site |
| 19:45-21:30 | DALAI_GA/SASHA/DAMMIN/GASBOR practicals (EMBL seminar room/library) |
| Day 5 : Polydisperse and interacting systems (Sun 9 Sep.) | |
| 09:00-10:00 | Form and structure factors - O.Glatter (.pdf file (1.6 MB)) |
| 10:00-10:50 | GIFT program tutorial - O.Glatter |
| 10:50-11:10 | Coffee break |
| 11:10-12:00 | Mixtures: linear and nonlinear modelling - V.Volkov (.pdf file (720 kB)) |
| 12:30-13:30 | Lunch, DESY Bistro, Building 9a |
| 14:00-15:00 | Programs OLIGOMER/MIXTURE tutorial - V.Volkov, P.Konarev |
| 15:00-16:00 | Analysis of equilibrium protein solutions - K. Brown |
| 16:00-16:30 | Coffee break |
| 16:30-18:30 | Time resolved scattering and protein/RNA folding - S.Doniach |
| 18:30-19:15 | Supper on the DESY site |
| 19:15-21:30 | GIFT/OLIGOMER/MIXTURE practical (EMBL seminar room/library) |
| Day 6 : Studies of different types of systems (Mon, 10 Sep.) | |
| 09:00-10:50 | Lipoproteins and membranes - P.Laggner (.pdf file (4.6 MB)) |
| 10:50-11:10 | Coffee break |
| 11:10-12:00 | Protein-carbohydrate complexes - P.Vachette |
| 12:00-14:00 | Lunch, DESY Bistro, Building 9a |
Free afternoon (optional excursion to the Speicherstadt) | |
| Day 7 : Rigid body refinement (Tue 11 Sep.) | |
| 09:00-09:50 | Computation of solution scattering from atomic models - D.Svergun (.pdf file (1.2 MB)) |
| 09:50-10:40 | CRYSOL/CRYSON program tutorial - M.Malfois |
| 10:40-11:00 | Coffee break |
| 11:00-12:00 | CRYDAM program tutorial - M. Malfois (.pdf file (117 KB)) |
| 12:30-13:30 | Lunch, DESY Bistro, Building 9a |
| 14:00-15:00 | Interactive vs automated refinement - D.Svergun (.pdf file (2.9 MB)) |
| 16:00-16:00 | ASSA/MASSHA program tutorial - M.Petoukhov, P.Konarev (.pdf file (265 KB)) |
| 16:00-16:30 | Coffee break |
| 16:30-18:30 | Rigid body refinement: applications to proteins - K.Brown, S.Koenig |
| 18:30-19:15 | Supper on the DESY site |
| 19:15-21:30 | Rigid body refinement practical (EMBL seminar room/library) |
| Day 8 : Related methods (Wed 12 Sep.) | |
| 09:00-09:50 | Supramolecular complexes and in situ property mapping - P.Laggner (.pdf file (2.1 MB)) |
| 09:50-10:40 | Computation of hydrodynamic parameters - G. de la Torre |
| 10:40-11:00 | Coffee break |
| 11:00-12:00 | HYDRO program tutorial - G. de la Torre |
| 12:30-13:30 | Lunch, DESY Bistro, Building 9a |
| 14:00-15:30 | Quasielastic light scattering - J.Langowski |
| 15:30-16:00 | Coffee break |
| 16:00-18:00 | Detection of aggregates using QELS - J.Langowski (EMBL wetlab) |
| 18:00-18:45 | Supper on the DESY site |
| 18:45-21:30 | Free practicals and data analysis (EMBL seminar room/library) |
| Day 9 : General discussion (Thu 13 Sep.) | |
| 09:00-10:30 | Participating students: presentation of results (30 min each) |
| 10:30-11:00 | Coffee break |
| 11:00-12:00 | Participating students: presentation of results (30 min each) |
| 12:30-13:30 | Lunch, DESY Bistro, Building 9a |
| 14:00-16:30 | Participating students: presentation of results (30 min each) |
| 16:30-17:00 | Coffee break |
| 17:00-19:30 | Participating students: presentation of results (30 min each) |
| 20:00-22:00 | Course dinner |
| Day 10 : General discussion (Fri 14 Sep.) | |
| 09:00-10:30 | Participating students: presentation of results (30 min each) |
| 10:30-11:00 | Coffee break |
| 11:00-12:00 | Concluding remarks + Departure |
EMBL Hamburg
Building 25A, DESY
Notkestrasse 85
22603 Hamburg
Germany
Tel. +49 40 89902110 /
+49 40 89902111
Fax. +49 40 89902149 /
+49 40 89902104
 | 3 Apr 2003 |