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EMBO PEPC4 course - Programme
Wed. 11th August
Room 109
  09.00 - 09.15  
  Paul Tucker - Welcome  
  09.15 - 10.15  
  L. Jeanne Perry - Expression systems for Structural Genomics  
  10.15 - 11.15  
  Gunter Stier - Heterologous expression in E. Coli  
  11.15 - 11.45    Coffee  
  11.45 - 12.15  
  Arie Geerlof - Coexpression of chaperones in E.coli  
  12.15 - 13.15  
  Tom Kost - Baculovirus expression  
  13.15 - 14.00    Sandwich lunch at the EMBL  
  14.00 - 15.30  
  Student presentations (Chair Young Hwa Song)  
  15.30 - 16.00    Tea break  
  16.00 - 19.00  
  Practical Session 1  
  20.00    Dinner at the BISTRO, Building 9a  
 

Thu. 12th August
Room 109
  09.00 - 12.00  
  Practical Session 2  
  12.00 - 13.00    Sandwich lunch at the EMBL  
  13.00 - 14.00  
  Reinhard Grisshammer - Expression of membrane proteins  
  14.00 - 15.30  
  Student presentations (Chair Paul Tucker)  
  15.30 - 16.30  
  Expression surgery [Panel JP(Chair)/GS/AG/TK/RG]  
  16.30 - 19.30  
  Practical Session 3  
  20.30    Dinner and bowling evening at Stan's Kegelbahn, Bertrant-Russel Str. Tel. 81955610  
 

Fri. 13th August
Room 109
  09.00 - 09.45  
  Bernhard Rupp - Automation and data mining in High Throughput crystallization  
  09.45 - 10.00    Coffee break  
  10.00 - 13.00  
  Practical Session 4  
  13.00 - 14.00    Sandwich lunch at the EMBL  
  14.00 - 16.00  
  Student presentations (Chair Arie Geerlof)  
  16.00 - 16.30    Tea break  
  16.30 - 19.30  
  Practical Session 5  
  20.30    Dinner and opening ceremony of the olympics at the DESY Bistro  
 

Sat. 14th August
Room 109
  09.00 - 10.00  
  Young-Hwa Song - Principles and modern methods of protein purification  
  10.00 - 13.00  
  Practical Session 6  
  13.00 - 14.00    Sandwich lunch at the EMBL  
  14.00 - 15.00  
  Alan Cooper - Microcalorimetry of Protein-Ligand Interactions  
  15.00 - 15.30    Tea break  
  15.30 - 18.30  
  Practical Session 7  
  20.00    Dinner will be provided for those with no other plans  
 

Sun. 15th August
  09.00 - 12.00  
  Practical Session 8  
  12.00 - 13.00    Sandwich lunch at the EMBL  
  13.00  
  Free afternoon  
  20.00    Dinner will be provided for those with no other plans  
 

Mon. 16th August
Room 109
  09.00 - 09.45  
  Bernhard Rupp - Physico-chemical foundations of crystallization  
  09.45 - 10.30  
  Terese Bergfors - Interpretation of the crystallization drop results  
  10.30 - 11.00    Coffee break  
  11.00 - 11.45  
  Joanne Yeh - Calorimetric Approaches to Characterizing Effects of Additives on Protein Crystallization  
  11.45 - 12.45  
  Andy Freer - Extraction, purification and crystallization of Membrane Proteins  
  12.45 - 13.45    Sandwich lunch at the EMBL  
  13.45 - 14.30  
  Alex McPherson - Crystal growth  
  14.30 - 15.30  
  Crystallization surgery - Panel AMcP(Chair)/TB/AF/BR  
  15.30 - 16.00    Tea break  
  16.00 - 19.00  
  Practical Session 9  
  20.00    Dinner at Tsien-Yen, Flurstrasse 226, Tel. 803525  
 

Tue. 17th August
Room 235
  09.00 - 09.30  
  Ehmke Pohl - Complementarity of structural techniques  
  09.30 - 12.30  
  Practical Session 10  
  12.30 - 13.30    Sandwich lunch at the EMBL  
  13.30 - 16.30  
  Practical Session 11  
  16.30 - 19.30  
  Practical Session 12  
  20.30    Dinner  
 

Wed. 18th August
Morning: Room 235, Afternoon: Room 109
  09.00 - 09.30  
  Gino Segre - Protein Crystallization in a Microfluidic Environment  
  09.30 - 12.30  
  Practical Session 13  
  12.30 - 13.30    Sandwich lunch at the EMBL  
  13.30 - 16.30  
  Practical Session 14  
  16.30 - 17.00    Tea break  
  17.00 - 17.45  
  Juri Rappsilber - The use of Mass Spectrometry in Structural Biology  
  18.00 - 19.00  
  Question Time (Panel, AC(chair), JR, Y-HS, BR)  
  20.00    Dinner at Don Quichotte, Osdorfer Landstrasse 162a, Tel. 801304  
 

Thu. 19th August
  09.00 - 12.00  
  Practical Session 15  
  12.00 - 13.00  
  Final discussion and lunch  
 

The surgeries are aimed at discussing the participants specific problems. The questions will be gathered in advance by the organisers and passed to the panel for consideration.

Practical Sessions

5 groups of four students.

Long practicals of two 3hr sessions on adjacent days.
These five practicals (repeated 5 times !!!) are

A. Prokaryotic Expression (Jeanne Perry, Gunter Stier, Frank Lehmann)
B. Baculovirus Expression (Tom Kost, Eleni Mumtsidu, Arie Geerlof)
C. Protein Purification (Joanne Yeh, Young-Hwa Song, Matthew Groves)
D. Protein Characterisation, ITC & DLS (Alan Cooper, Bernhard Rupp, Preben Morth)
E. Membrane Protein Preparation & Crystallisation( Reinhard Grisshammer, Andy Freer, Simone Weyand, Katja Schirwitz)

Short practicals of one 3hr session.
These five practicals (some may be repeated 5 times !!!) are

E. Membrane Protein Preparation & Crystallisation( Reinhard Grisshammer, Andy Freer, Simone Weyand, Katja Schirwitz)
F. Vapour diffusion methods(Alex McPherson, Brice Kauffmann)
G. Seeding and Batch mehods for crystallization (Terese Bergfors, Jack King-Scott)
H. Crystallization in lipic cubic phases (Joanne Yeh, Simone Weyand, Katja Schirwitz)
I. Dialysis and free interface diffusion methods(Bernhard Rupp)

The table below shows which practicals will be run in which time slots (1-15). So for example Tom and Eleni (Practical B) will have Student Group I in Practical Sessions 3 and 4 (Thu 12th 16.30-19.30 and Friday 13th 10.00-13.00), Student Group II in Practical Sessions 5 and 6 and so on.

Student group I:Ljiljana Sjekloca, Olivia Sleator, Sabrina Biarrotte-Sorin, Franco Perrina
Student group II:Rainer Bucher, Raquel Garcia-Castellanos, Maria Martinez Jimenez, Marios Zouridakis
Student group III:Artem Lyubimov, Lenita Viitanen, Oliver Schicht, Heidi Voser
Student group IV:Arundhati Chattopadhyay, Eytan Cohen, Marzia Massimi, Rebecca Cole
Student group V:Barbara Zambelli, Claudia Crovace, Dorian Schonfeld, Samer Sourial

Student groupIIIIIIIVV
Practical
A1+23+45+67+89+10
B3+45+67+89+101+2
C5+67+89+101+23+4
D7+89+101+23+45+6
E9+10+151+2+113+4+125+6+137+8+14
F1112131414
G1213141511
H1314151112
I1415111213