|
2009
Polyakov, K.M., Fedorova, T.V., Stepanova, E.V., Cherkashin, E.A., Kurzeev, S.A.,
Strokopytov, B.V., Lamzin, V.S. & Koroleva, O.V. (2009) Structure of native
laccase from Trametes hirsuta at 1.8 A resolution. Acta Cryst. D65, 611-617.
Jordanova, R., Lamzin, V. & Groves, M. (2009) Crystal identification and
classification. In Horizons in World Physics: Vol. 262, Astrophysics and Condensed
Matter (Hardwell, T.G. ed.), pp. 175-193, Nova Science Publishers Inc.
2008
Faust, A., Panjikar, S., Mueller, U., Parthasarathy, V., Schmidt, A., Lamzin, V.S.
& Weiss, M.S. (2008) A tutorial for learning and teaching macromolecular
crystallography. J. Appl. Cryst. 41, 1161-1172.
Hattne, J. & Lamzin, V.S. (2008) Pattern recognition-based detection of planar
objects in 3D electron density maps. Acta Cryst. D64, 834-842.
Abstract
Langer, G., Cohen, S.X., Lamzin, V.S. & Perrakis, A. (2008) Automated
macromolecular model building for X-ray crystallography using ARP/wARP version 7.
Nature Protocols 3, 1171-1179.
Abstract
Schmidt, A., Gruber, K., Kratky, C. & Lamzin, V.S. (2008) Atomic resolution
crystal structures and quantum chemistry meet to reveal subtleties of hydroxynitrile
lyase catalysis. J. Biol. Chem. 283, 21827-21836.
Abstract
Joosten, K., Cohen, S.X., Emsley, P., Mooij, W., Lamzin, V.S. & Perrakis, A.
(2008) A knowledge-driven approach for crystallographic protein model completion.
Acta Cryst. D64, 416-424.
Abstract
Manicka, S., Peleg, Y., Unger, T., Albeck, S., Dym, O., Greenblatt, H.M., Bourenkov, G.,
Lamzin, V., Krishnaswamy, S. & Sussman, J.L. (2008) Crystal structure of YagE,
a putative DHDPS-like protein from Escherichia coli K12. Proteins 71, 2102-2108.
Abstract
Cohen, S.X., Jelloul M.B., Long, F., Vagin, A., Knipscheer, P., Lebbink, J., Sixma, T.K.,
Lamzin, V.S., Murshudov, G.N. & Perrakis, A. (2008) ARP/wARP and molecular
replacement: the next generation. Acta Cryst. D64, 49-60.
Abstract
2007
Morris, R.J., Perrakis, A. & Lamzin, V.S. (2007) Getting a macromolecular model:
model building, refinement, and validation. In Macromolecular Crystallography -
conventional and high-throughput methods (Sanderson M.R. & Skelly J.V. eds.),
pp. 155-172, Oxford University Press.
Schirwitz, K., Schmidt, A. & Lamzin, V.S. (2007) High-resolution structures of
formate dehydrogenase from Candida boidinii. Protein Sci. 16, 1146-1156.
Abstract
Schmidt, A. & Lamzin, V.S. (2007) From atoms to proteins.
Cell. Mol. Life Sci. 64, 1959-1969.
Abstract
Meijers, R., Adolph, H.W., Dauter, Z., Wilson, K.S., Lamzin, V.S. &
Cedergren-Zeppezauer, E.S. (2007) Structural evidence for a ligand coordination switch
in liver alcohol dehydrogenase. Biochemistry 46, 5446-5454.
Abstract
Evrard, G.X., Langer, G.G., Perrakis, A. & Lamzin, V.S. (2007) Assessment of
automatic ligand building in ARP/wARP. Acta Cryst. D63, 108-117.
Abstract
2006
Pothineni, S.B., Strutz, T. & Lamzin, V.S. (2006) Automated
detection and centring of cryo-cooled protein crystals. Acta Cryst. D62, 1358-1368.
Abstract
Lyashenko, A.V., Zhukhlistova, N.E., Gabdoulkhakov, A.G., Zhukova, Y.N.,
Voelter, W., Zaitsev, V.N., Bento, I., Stepanova, E.V., Kachalova, G.S.,
Koroleva, O.G., Cherkashyn, E.A., Tishkov, V.I., Lamzin, V.S.,
Schirwitz, K., Morgunova, E.Y., Betzel, C., Lindley, P.F. & Mikhailov, A.B.
(2006) Purification, crystallization and preliminary X-ray study of the
fungal laccase from Cerrena maxima. Acta Cryst. F62, 954-957.
Abstract
Urusova, D.V., Levdikov, V.M., Antonyuk, S.V., Grebenko, A.I., Lamzin, V.S.
& Melik-Adamyan, V.R. (2006) X-ray diffraction study of the complex of the
enzyme SAICAR synthase with the reaction product. Crystallography Reports 51, 824-827.
Bahar, M., Ballard, C., Cohen, S.X., Cowtan, K.D., Dodson, E.J.,
Emsley, P., Esnouf, R.M., Keegan, R., Lamzin, V., Langer, G.,
Levdikov, V., Long, F., Meier, C., Muller, A., Murshudov, G.N.,
Perrakis, A., Siebold, C., Stein, N., Turkenburg, M.G.W., Vagin, A.A.,
Winn, M., Winter, G. & Wilson, K.S. (2006) SPINE workshop on automated
X-ray analysis: A progress report. Acta Cryst. D62, 1170-1183.
Abstract
Lyashenko, A.V., Bento, I., Zaitsev, V.N., Zhukhlistova, N.E., Zhukova, Y.N.,
Gabdoulkhakov, A.G., Morgunova, E.Y., Voelter, W., Kachalova, G.S.,
Stepanova, E.V., Koroleva, O.G., Lamzin, V.S., Tishkov, V.I., Betzel, C.,
Lindley, P.F. & Mikhailov, A.B. (2006) X-ray structural studies of the fungal
laccase from Cerrena maxima. J. Biol. Inorg. Chem. 11, 963-973.
Abstract
Schmidt, A. & Lamzin, V.S. (2006) X-ray Data Collection from
Macromolecular Crystals. In "Encyclopedic Reference of Genomics and Proteomics
in Molecular Medicine" (Ganten, D. & Ruckpaul, K. eds.), pp. 2029-2034,
Springer, Berlin, Heidelberg, New York.
Kauffmann, B., Weiss, M.S., Lamzin, V.S. & Schmidt, A. (2006)
How to avoid premature decay of your macromolecular crystal - a quick
soak for long life. Structure 14, 1099-1105.
Abstract
Boyko, K.M., Polyakov, K.M., Tikhonova, T.V., Slutsky, A., Antipov, A.N.,
Zvyagilskaya, R.A., Bourenkov, G.P., Popov, A.N., Lamzin, V.S.
&Popov, V.O. (2006) Crystallization and preliminary X-ray analysis of
cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens.
Acta Crystallogr. F62, 215-217.
Abstract
Lyashenko, A.V., Zhukhlistova, N.E., Stepanova, E.V., Schirwiz, K.,
Zhukova, Yu.N., Koroleva, O.V., Lamzin, V.S., Zaitsev, V.N.,
Gabdulkhakov, A.G. & Mikhailov, A.M. (2006) A preliminary X-ray diffraction
study of the laccase from Coriolus zonatus in the native state.
Crystallography Reports 51, 278-282.
2005
Schmidt, A. & Lamzin, V.S. (2005) Extraction of
functional motion in trypsin crystal structures. Acta Crystallogr. D61, 1132-1139.
Abstract
Panjikar, S., Parthasarathy, V., Lamzin, V.S., Weiss, M.S. &
Tucker, P.A. (2005) Auto-Rickshaw: an automated crystal structure
determination platform as an efficient tool for the validation of
an X-ray diffraction experiment. Acta Crystallogr. D61, 449-457.
Abstract
2004
Zwart, P.H., Langer, G.G. & Lamzin, V.S. (2004) Modelling
bound ligands in protein crystal structures. Acta Crystallogr.
D60, 2230-2239.
Abstract
Cohen, S.X., Morris, R.J., Fernandez, F.J., Jelloul, M. Ben,
Kakaris, M., Parthasarathy, V., Lamzin, V.S., Kleywegt, G.J.
& Perrakis, A. (2004) Towards complete validated models in the
next generation of ARP/wARP. Acta Crystallogr. D60, 2222-2229.
Abstract
Meijers, R., Blagova, E.V., Levdikov, V.M., Rudenskaya, G.N.,
Chestukhina, G.G., Akimkina, T.V., Kostrov, S.V., Lamzin, V.S. &
Kuranova, I.P. (2004) The crystal structure of glutamyl endopeptidase
from Bacillus intermedius reveals a structural link between
zymogen activation and charge compensation. Biochemistry 43, 2784-2791.
Abstract
Zwart, P.H. & Lamzin, V.S. (2004) The influence of positional
errors on the Debye effects. Acta Crystallogr. D60, 220-226.
Abstract
Morris, R.J., Zwart, P.H., Cohen, S., Fernandez, F.J., Kakaris, M.,
Kirillova, O., Vonrhein, C., Perrakis, A. & Lamzin, V.S. (2004)
Breaking good resolutions with ARP/wARP. J. Synchr. Rad. 11, 56-59.
Abstract
2003
Morris, R.J., Perrakis, A. & Lamzin, V.S. (2003) ARP/wARP and
automatic interpretation of protein electron density maps. In Methods
Enzymol. (Carter, C.W. & Sweet, R.M. eds.) 374, 229-244.
Zwart, P.H. & Lamzin, V.S. (2003) Distance distributions and
electron-density characteristics of protein models. Acta Cryst. D59, 2104-2113.
Abstract
Zwart, P.H. & Lamzin, V.S. (2003) Distance distributions and
electron-density characteristics of protein models. Acta Cryst. D59, 2104-2113.
Abstract
Schmidt, A., Jelsch, C., Ostergaard, P., Rypniewski, W.
& Lamzin, V.S. (2003) Trypsin revisited: crystallography at (sub)
atomic resolution and quantum chemistry revealing details of catalysis.
J. Biol. Chem. 278, 43357-43362.
Abstract
Kuranova, I.P., Polyakov, K.M., Smirnova, E.A., Hoehne, W.E., Lamzin, V.S.
& Meijer, R. (2003) Three-dimensional structure of Saccharomyces cerevisiae
inorganic pyrophosphatase complexed with cobalt and phosphate ions.
Crystallography Reports 48, 953-958.
Urusova, D.V., Antonyuk, S.V., Grebenko, A.I., Lamzin, V.S. &
Melik-Adamyan, V.R. (2003) X-ray diffraction study of the complex of the enzyme
SAICAR synthase with substrate analogues. Crystallography Reports 48, 763-767.
Terwilliger, T.C., Park, M.S., Waldo, G.S., Berendzen, J., Hung, L.W.,
Kim, C.Y., Smith, C.V., Sacchettini, J.C., Bellinzoni, M., Bossi, R.,
De Rossi, E., Mattevi, A., Milano, A., Riccardi, G., Rizzi, M., Roberts, M.M.,
Coker, A.R., Fossati, G., Mascagni, P., Coates, A.R., Wood, S.P.,
Goulding, C.W., Apostol, M.I., Anderson, D.H., Gill, H.S., Eisenberg, D.S.,
Taneja, B., Mande, S., Pohl, E., Lamzin, V., Tucker, P., Wilmanns, M.,
Colovos, C., Meyer-Klaucke, W., Munro, A.W., McLean, K.J., Marshall, K.R.,
Leys, D., Yang, J.K., Yoon, H.J., Lee, B.I., Lee, M.G., Kwak, J.E., Han, B.W.,
Lee, J.Y., Baek, S.H., Suh, S.W., Komen, M.M., Arcus, V.L., Baker, E.N.,
Lott, J.S., Jacobs, W. Jr., Alber, T. & Rupp, B. (2003)
The TB structural genomics consortium: a resource for Mycobacterium
tuberculosis biology. Tuberculosis (Edinb). 83, 223-249.
Abstract
Pegasova, T.V., Zwart, P., Koroleva, O.V., Stepanova, E.V., Rebrikov, D.V.
& Lamzin, V.S. (2003) Crystallization and preliminary X-ray
analysis of a four-copper laccase from Coriolus hirsutus. Acta Cryst. D59,
1459-1461.
Abstract
2002
Schmidt, A. & Lamzin, V.S. (2002) Veni, vedi, vici - atomic
resolution unraveling the mysteries of protein function. Curr. Op.
Struct. Biol. 12, 698-703.
Abstract
Schmidt, A., Gonzalez, A., Morris, R.J., Costabel, M., Alzari, P.M.
& Lamzin, V.S. (2002) Advantages of high-resolution phasing: MAD
to atomic resolution. Acta Crystallogr. D58, 1433-1441.
Abstract
Sevcik, J., Lamzin, V.S., Dauter, Z. & Wilson, K.S. (2002) Atomic resolution data
reveal flexibility in the structure of RNase Sa. Acta Crystallogr. D58, 1307-1313.
Abstract
Razeto, A., Kochhar, S., Herbert Hottinger, H., Dauter, M., Wilson, K.S. & Lamzin, V.S.
(2002) Domain closure, substrate specificity and catalysis of D-Lactate dehydrogenase from
Lactobacillus bulgaricus. J. Mol. Biol. 318, 109-119.
Abstract
Morris, R.J., Perrakis, A. & Lamzin, V.S. (2002)
ARP/wARP's model-building algorithms. I. The main chain. Acta Crystallogr. D58, 968-975.
Abstract
Guerin, D.M., Lascombe, M.B., Costabel, M., Souchon, H., Lamzin, V., Beguin, P. &
Alzari, PM. (2002) Atomic (0.94 Å) resolution structure of an inverting glycosidase
in complex with substrate. J. Mol. Biol. 316, 1061-1069.
Abstract
Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A. & Mazzarella. L. (2002)
Atomic resolution structures of ribonuclease A at six pH values. Acta Crystallogr. D58, 441-450.
Abstract
Galkin, A.G., Kutsenko, A.S., Bajulina, N.P., Esipova, N.G., Lamzin, V.S., Mesentsev, A.V.,
Shelukho, D.V., Tikhonova, T.V., Tishkov, V.I., Ustinnikova, T.B. & Popov, V.O. (2002)
Site-directed mutagenesis of the essential arginine of the formate dehydrogenase active
centre. Biochim. Biophys. Acta 1594, 136-149.
Abstract
2001
Samygina, V.R., Popov, A.N., Rodina, E.V., Vorobyeva, N.N., Lamzin, V.S.,
Polyakov, K.M., Kurilova, S.A., Nazarova, T.I. & Avaeva, S.M. (2001)
The structures of Escherichia coli inorganic pyrophosphatase complexed with
Ca2+ or CaPPi at atomic resolution and their mechanistic implications
J. Mol. Biol. 314, 633-645.
Perrakis, A., Harkiolaki, M., Wilson, K.S. & & Lamzin, V.S. (2001)
ARP/wARP and molecular replacement. Acta Crystallorg. D57, 1445-1450.
Abstract
Barynin, V.V., Whittaker, M.M., Antonyuk, S.V., Lamzin, V.S., Harrison, P.M.,
Artymiuk, P.J. & Whittaker, J.W. (2001) Crystal structure of manganese catalase from
Lactobacillus plantarum. Structure 9, 725-738.
Abstract
Lamzin, V.S., Perrakis, A. & Wilson, K.S. (2001) The ARP/WARP suite for automated
construction and refinement of protein models. In International Tables for Crystallography.
Volume F: Crystallography of biological macromolecules (Rossmann, M.G. Arnold, E. eds.),
Dordrecht, Kluwer Academic Publishers, The Netherlands, pp. 720-722.
Tishchenko, S., Nikulin, A., Fomenkova, N., Nevskaya, N., Nikonov, O., Dumas, P.,
Moine, H., Ehresmann, B., Ehresmann, C., Piendl, W., Lamzin, V., Garber, M. & Nikonov, S.
(2001) Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA
complex from the archaeon Methanococcus jannaschii. J. Mol. Biol. 311, 311-324.
Abstract
Grabarse, W., Mahlert, F., Duin, E.C., Goubeaud, M., Shima, S., Thauer, R.K., Lamzin, V. &
Ermler, U. (2001) On the mechanism of biological methane formation: structural evidence for
conformational changes in methyl-coenzyme M reductase upon substrate binding.
J. Mol. Biol. 309, 315-330.
Abstract
Makedonopoulou, S., Yannakopoulou, K., Mentzafos, D., Lamzin, V., Popov, A. &
Mavridis, I.M. (2001) Non-covalent interactions in the crystallization of the enantiomers
of 1,7-dioxaspiro[5.5]undecane (olive fly sex pheromone) by enantiospecific cyclodextrin
hosts, hexakis(2,3,6-tri-O-methyl)-a-cyclodextrin and heptakis(2,3,6-tri-O-methyl)-b-cyclodextrin.
Acta Crystallogr B57, 399-409.
Abstract
Sebastiao, M.P., Lamzin, V., Saraiva, M.J. & Damas, A.M. (2001)
Transthyretin stability as a key factor in amyloidogenesis: X-ray analysis at
atomic resolution. J. Mol. Biol. 306, 733-744.
Abstract
Meijers, R., Morris, R.J., Adolph, H.W., Merli, A., Lamzin, V.S. &
Cedergren-Zeppesauer, E.S. (2001) On the enzymatic activation of NADH.
J. Biol. Chem.276, 9316-9321.
Abstract
Antonyuk, S.V., Grebenko, A.I., Levdikov, V.M., Urusova, D.V., Melik-Adamyan, V.R.,
Lamzin, V.S. & Wilson, K.S. (2001) X-ray diffraction study of the complexes
of SAICAR synthase with adenosinetriphosphate. Crystallography Reports 46, 620-625.
2000
Lamzin, V.S.
& Perrakis, A. (2000) Current state of automated crystallographic
data analysis. Nature Struct. Biol. 7, Structural Genomics Supplement,
978-981. Abstract
Lamzin, V.S.,
Perrakis, A., Bricogne, G., Jiang, J., Swaminathan, S. & Sussman,
J.L. (2000) Apotheosis, not apocalypse: methods in protein crystallography.
Acta Crystallogr. D56, 1510-1511. Abstract
Adolph, H.-W.,
Zwart, P., Meijers, R., Hubatsch, I., Kiefer, M., Lamzin, V.
& Cedergren-Zeppezauer, E. (2000) Structural basis for substrate
specificity differences of horse liver alcohol dehydrogenase isozymes.
Biochemistry 39; 12885-12897. Abstract
Samygina, V.R.,
Antonyuk, S.V., Lamzin, V.S. & Popov, A.N. (2000) Improving
the X-ray resolution by reversible flash-cooling combined with concentration
screening, as exemplified with PPase. Acta Crystallogr. D56, 595-603.
Abstract
Kochhar, S.,
Lamzin, V.S., Razeto, A., Delley, M., Hottinger, H. &
Germond, J.-E. (2000) Roles of His205, His296, His303 and Asp259
in catalysis by NAD+-specific D-lactate dehydrogenase. Eur. J. Biochem.
267, 1633-1639. Abstract
Jelsch C., Teeter
M.M., Lamzin V., Pichon-Pesme V., Blessing R.H. & Lecomte
C. (2000) Accurate protein crystallography at ultra-high resolution:valence
electron distribution in crambin. Proc. Natl. Acad. Sci. USA. 97,
3171-3176. Abstract
and full text
Antonyuk, S.V., Melik-Adamyan, V.R., Popov, A.N., Lamzin, V.S.,
Hempstead, P.D., Harrison, P.M., Artymyuk, P.J. & Barynin, V. V. (2000)
Three-dimensional structure of the enzyme dimanganese catalase from Thermus
Thermophilus at 1 A resolution. Crystallography Reports 45, 105-116.
1999
Frazao,
C., Sieker, L., Sheldrick, G., Lamzin, V., LeGall, J. &
Carrondo, M.A. (1999) Ab initio structure solution of a dimeric
cytochrome c3 from Desulfovibrio gigas containing disulfide bridges.
J. Biol. Inorg. Chem. Apr 4:2, 162-165. Abstract
Declercq, J.-P.,
Evrard, C., Lamzin, V.S. & Parello, J. (1999) Crystal
structure of the EF-hand parvalbumin at atomic resolution (0.91
Å) and at low temperature (100K). Evidence for conformational
multistates within the hydrophobic core. Protein Sci. 8, 2194-2204.
Abstract
Berisio, R.,
Lamzin, V.S., Sica, F., Wilson, K.S., Zagari, A. & Mazzarella,
L. (1999) Protein titration in the crystal state. J. Mol. Biol.
292, 845-854. Abstract
Parisini, E.,
Capozzi, F., Lubini, P., Lamzin, V., Luchinat, C. & Sheldrick,
G.M. (1999) Ab initio solution and refinement of two high-potential
iron protein structures at atomic resolution. Acta Crystallogr.
D55, 1773-1784. Abstract
Lamzin, V.S.,
Morris, R.J., Dauter, Z., Wilson, K.S. & Teeter, M.M. (1999)
Experimental observation of bonding electrons in proteins. J. Biol.
Chem. 274, 20753-20755. Abstract
Perrakis, A.,
Antoniadou-Vyza, E., Tsitsa, P., Lamzin, V.S., Wilson, K.S.
& Hamodrakas, S.J. (1999) Molecular, crystal and solution structure
of a b-cyclodextrin complex with the bromide salt of 2-(3-dimethylaminopropyl)tricyclo[3.3.1.13,7]decan-2-ol,
a potent antimicrobial drug. Carbohydrate Research 317, 19-28. Abstract
Perrakis, A.,
Morris, R. & Lamzin, V.S. (1999) Automated protein model
building combined with iterative structure refinement. Nature Structural
Biology 6, 458-463. Abstract
1998
Dodson, E.J.,
Davies, G.J., Lamzin, V.S., Murshudov, G.N. & Wilson,
K.S. (1998) Validation tools: can they indicate the information
content of macromolecular crystal structures ? Structure 6, 685-690.
Abstract
Walsh, M.A.,
Schneider, T.R., Sieker, L.C., Dauter, Z., Lamzin, V.S. &
Wilson, K.S. (1998) Refinement of triclinic hen egg-white lysozyme
at atomic resolution. Acta Crystallogr. D54, 522-546. Abstract
Esposito, L.,
Sica, F., Sorrentino, G., Berisio, R., Carotenuto, L., Giordano,
A., Raia, C.A., Rossi, M., Lamzin, V.S., Wilson, K.S. &
and Zagari, A. (1998) Protein crystal growth in the Advanced Protein
Crystallisation Facility on the LMS Mission: a comparison of Sulfolobus
solfataricus alcohol dehydrogenase crystals grown on the ground
and in microgravity. Acta Crystallogr. D54, 386-390. Abstract
EU 3-D Validation
Network: Wilson, K.S., Butterworth, S., Dauter, Z., Lamzin, V.S.,
Walsh, M., Wodak, S., Pontius, J., Richelle, J., Vaguine, A., Sander,
C., Hooft, R.W.W., Vriend, G., Thornton, J.M., Laskowski, R.A.,
MacArthur, M.W., Dodson, E.J., Murshudov, G., Oldfield, T.J., Kaptein,
R. & Rullmann J.A.C. (1998) Who checks the checkers ? Four validation
tools applied to eight atomic resolution structures. J. Mol. Biol.
276, 417-436. Abstract
Levdikov, V.M.,
Barynin, V.V., Grebenko, A.I., Melik-Adamyan, W.R., Lamzin, V.S.
& Wilson, K.S. (1998) The structure of SAICAR Synthase: a participant
in de novo purine nucleotide biosynthesis. Structure 6, 363-376.
Abstract
Kutzenko, A.S.,
Lamzin, V.S. & Popov, V.O. (1998) Conserved supersecondary
structural motif in NAD-dependent dehydrogenases. FEBS Lett. 423,
105-109.
Abstract
Asselt van,
E.J., Perrakis, A., Kalk, K.H., Lamzin, V.S. & Dijkstra,
B.W. (1998) Accelerated X-ray structure elucidation of a 36 kDa
muramidase/transglycosylase using wARP. Acta Crystallogr. D54, 58-73.
Abstract
1997
Dauter, Z.,
Lamzin, V.S. & Wilson, K.S. (1997) The benefits of atomic
resolution. Curr. Opin. Struct. Biol. 7, 681-688. Abstract
Mathieu, M.,
Modis, Y., Zeelen, J.Ph., Engel, C., Abagyan, R.A., Ahlberg, A.,
Rasmessen, B., Lamzin, V.S., Kunau, W.H. & Wierenga,
R.K. (1997) The 1.8 Å crystal structure of the dimeric peroxisomal
3-ketoacyl-CoA thiolase of Saccharomyces cerevisiae: Implications
for substrate binding and reaction mechanism. J. Mol. Biol. 273,
714-728. Abstract
Perrakis, A.,
Sixma, T.K., Wilson, K.S. & Lamzin, V.S. (1997) wARP:
improvement and extension of crystallographic phases by weighted
averaging of multiple refined dummy atomic models. Acta Crystallogr.
D53, 448-455.
Lamzin, V.S.
& Wilson, K.S. (1997) Automated refinement for protein crystallography.
In Methods in Enzymology (Carter, C. & Sweet, B. eds.) 277,
269-305.
Longhi, S.,
Czjzek, M., Lamzin, V., Nicolas, A. & Cambillau, C. (1997)
Atomic resolution (1.0 Å) crystal structure of Fusarium solani
cutinase: stereochemical analysis. J. Mol. Biol. 268, 779-799. Abstract
Mesentsev, A.V.,
Lamzin, V.S., Tishkov, V.I., Ustinnikova, T.B. & Popov,
V.O. (1997) Effect of pH on kinetic parameters of NAD+-dependent
formate dehydrogenase. Biochemical J. 321, 475-480. Abstract
1996
Damas, A.M.,
Ribeiro, S., Lamzin, V.S. Palha, J.A. & Saraiva, M.J.
(1996) Structure of Val122Ile variant transthyretin - a cardiomyopathic
mutant. Acta Crystallogr. D52, 966-972.
Tishkov, V.I.,
Matorin, A.D., Rojkova, A.M., Fedorchuk, V.V., Savitsky, P.A., Dementieva,
L.A., Lamzin, V.S., Mezentzev, A.V. & Popov, V.O. (1996)
Site-directed mutagenesis of the formate dehydrogenase active centre:
Role of the His(332)-G1n(313) pair in enzyme catalysis. FEBS Lett.
390, 104-108. Abstract
Harutyunyan,
E.H., Kuranova, I.P., Vainshtein, B.K., Höhne, W.E., Lamzin,
V.S., Dauter, Z., Teplyakov, A.V. & Wilson, K.S. (1996)
X-ray structure of yeast inorganic pyrophosphatase complexed with
manganese and phosphate. Eur. J. Biochem. 239, 220-228.
Bacchi, A.,
Lamzin, V.S. & Wilson, K.S. (1996) A self-validation
technique for protein structure refinement: the extended Hamilton
test. Acta Crystallogr. D52, 641-646. Abstract
Pignol, D.,
Gaboriaud, C., Fontecilla-Camps, J.C., Lamzin, V.S. &
Wilson, K.S. (1996) How to escape from model bias with a high resolution
native data set - structure determination of the PcpA-S6 subunit
III. Acta Crystallogr. D52, 345-355.
Sevcik J., Dauter,
Z., Lamzin, V.S. & Wilson, K.S. (1996) Ribonuclease from
Streptomyces aureofaciens at atomic resolution. Acta Crystallogr.
D52, 327-344.
1995
Lamzin, V.S.,
Dauter, Z. & Wilson, K.S. (1995) How Nature deals with stereoisomers.
Curr. Opin. Struct. Biol. 5, 830-836. Abstract
Dauter, Z.,
Lamzin, V.S. & Wilson, K.S. (1995) Proteins at atomic
resolution. Curr. Opin. Struct. Biol. 5, 784-790. Abstract
Lamzin, V.S.,
Dauter, Z. & Wilson, K.S. (1995) Dictionary of protein stereochemistry.
J. Appl. Crystallogr., 28, 338-340.
1994
Tegoni, M.,
Silvestrini, M.C., Lamzin, V.S., Brunori, M. & Cambillau,
C. (1994) Crystallization and preliminary X-ray analysis of a new
crystal form of nitrate reductase from Pseudomonas aeruginosa. J.
Mol. Biol. 243, 347-350. Abstract
Popov, V.O.
& Lamzin, V.S. (1994) NAD+-dependent formate dehydrogenase.
Biochem. J. 301, Part 3, 625-643. Abstract
Kutsenko, A.S.,
Korolev, S.V., Lamzin, V.S. & Popov, V.O. (1994) Internal
symmetry of the tertiary structure of the NAD-dependent formate
dehydrogenase from Pseudomonas sp. 101. Mol. Biol. (Rus), 28, 626-632.
Edition in English: Mol. Biol. 28, Part 2, 415-419.
Lamzin, V.S.,
Dauter, Z. & Wilson, K.S. (1994) Dehydrogenation through the
looking-glass. Nature Structural Biology 1, 281-282.
Lamzin, V.S.,
Dauter, Z., Popov, V.O., Harutyunyan, E.H. & Wilson, K. (1994)
High resolution structures of holo and apo formate dehydrogenase.
J. Mol. Biol. 236, 759-785. Abstract
1993
Betzel, C.,
Dauter, Z., Genov, N., Lamzin, V., Navaza, J., Schnebli,
H.P., Visanji, M. & Wilson, K. (1993) Structure of the proteinase
inhibitor eglin c with hydrolysed reactive centre at 2.0 Å
resolution. FEBS Lett. 317, 185-188. Abstract
Lamzin, V.S.
& Wilson, K.S. (1993) Automated refinement of protein models.
Acta Crystallogr. D49, 129-147.
1992
Lamzin, V.S.,
Aleshin, A.E., Strokopytov, B.V., Yukhnevich, M.G., Popov, V.O.,
Harutyunyan, E.H. & Wilson, K.S. (1992) Crystal structure of
NAD-dependent formate dehydrogenase. Eur. J. Biochem. 206, 441-452.
Abstract
1990
Bogdanova, A.V.,
Cherednikova, T.V., Egorov, Ts.A., Harutyunyan, E.H., Kurochkina,
N.A., Lamzin, V.S., Savitskiy, A.P., Shumilin, I.A. &
Popov, V.O. (1990) Mapping of the immunodominant regions of the
NAD-dependent formate dehydrogenase. FEBS Lett. 260, 297-300. Abstract
Andrea Schmidt 2007
Mueller-Dieckmann, Ch., Panjikar, S. Schmidt, A., Mueller, S., Kuper, J., Geerlof, A.,
Wilmanns, M., Singh, R.K., Tucker, P.A. & Weiss, M.S. (2007) On the routine use of
soft X-rays in macromolecular crystallography. Part IV. Efficient determination of
anomalous substructures in biomacromolecules using longer wavelengths. Acta Cryst. D63, 366-380.
Abstract
Andrea Schmidt 2006
Schmidt, A. & Lamzin, V.S. (2006) X-ray Data Collection from
Macromolecular Crystals. In "Encyclopedic Reference of Genomics and Proteomics
in Molecular Medicine" (Ganten, D. & Ruckpaul, K. eds.), pp. 2029-2034,
Springer, Berlin, Heidelberg, New York.
Kauffmann, B., Weiss, M.S., Lamzin, V.S. & Schmidt, A. (2006)
How to avoid premature decay of your macromolecular crystal - a quick
soak for long life. Structure 14, 1099-1105.
Abstract
Hakanpaa, J., Linder, M., Popov, A.N., Schmidt, A. & Rouvinen, J. (2005) Hydrophobin
HFBII in detail: ultrahigh-resolution structure at 0.75 A. Acta Crystallogr. D62, 356-367.
Abstract
Andrea Schmidt 2005
Schmidt, A. & Lamzin, V.S. (2005) Extraction of
functional motion in trypsin crystal structures. Acta Crystallogr. D61, 1132-1139.
Abstract
Andrea Schmidt 2003
Schmidt, A., Jelsch, C., Ostergaard, P., Rypniewski, W.
& Lamzin, V.S. (2003) Trypsin revisited: crystallography at (sub)
atomic resolution and quantum chemistry revealing details of catalysis.
J. Biol. Chem. 278, 43357-43362.
Abstract
Andrea Schmidt 2002
Glieder, A., Pressnig, M., Schmidt, A., Stanzer, T., Reisner, A.
& Schwab, H. (2002) Cloning, expression and characterization of a new
2-Cl-propionic acid ester hydrolase from B. subtilis.
J. Mol. Catalysis B: Enzymatic 19-20, 237-245.
Schmidt, A. & Lamzin, V.S. (2002) Veni, vedi, vici - atomic
resolution unraveling the mysteries of protein function. Curr. Op. Struct. Biol. 12, 698-703.
Abstract
Schmidt, A., Gonzalez, A., Morris, R.J., Costabel, M., Alzari, P.M.
& Lamzin, V.S. (2002) Advantages of high-resolution phasing: MAD to atomic
resolution. Acta Crystallogr. D58, 1433-1441.
Abstract
Andrea Schmidt 2001
Schmidt,
A., Sivaraman, J., Li, Y., Larocque, R., Barbosa, J.A., Smith, C., Matte, A., Schrag, J.D. & Cygler, M.
(2001) Three-dimensional structure of 2-amino-3-ketobutyrate CoA ligase from Escherichia
coli complexed with a PLP-substrate intermediate: inferred reaction mechanism. Biochemistry
40, 5151-5160.
Abstract
Andrea Schmidt 2000
Schmidt,
A., Wu, H., MacKenzie, R.E., Chen, V.J., Bewly, J.R., Ray, J.E.,
Toth, J.E. & Cygler, M. (2000) Structures of three inhibitor complexes provide
insight into the reaction mechanism of the human methylenetetrahydrofolate
dehydrogenase / cyclohydrolase. Biochemistry 39, 6325-6335.
Abstract
Andrea Schmidt 1999
Schmidt,
A., Gübitz, G.M. & Kratky, C. (1999) Xylan binding subsite mapping in
the xylanase from penicillium simplicissimum using xylooligosaccharides as
cryo-protectant. Biochemistry 38, 2403-2412.
Abstract
Andrea Schmidt 1998
Schmidt,
A., Schlacher, A., Steiner, W., Schwab, H. & Kratky, C.
(1998) Structure of the xylanase from Penicillium simplicissimum.
Protein Science 7, 2081-2088.
Abstract
Andrea Schmidt 1997
Sauer, O., Schmidt,
A. & Kratky, C. (1997) Freeze-trapping isomorphous xenon
derivatives of protein crystals. J. Appl. Cryst. 30, 476-486.
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