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Publications

 2014

Automated identification of crystallographic ligands using sparse-density representations.
Carolan CG, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2014 Jul;70(Pt 7):1844-53. doi: 10.1107/S1399004714008578. Epub 2014 Jun 29.   PUBMED
PMID:25004962

Identification of additional telomerase component of the yeast H. polymorpha is a step towards understanding the complex at the atomic level.
Petrova OA, Smekalova EM, Zvereva ME, Lamzin V, Dontsova OA
Dokl Biochem Biophys. 2014 Mar;455(1):59-64. doi: 10.1134/S1607672914020057. Epub 2014 May 3.   PUBMED
PMID:24795101

Role of kappa-->lambda light-chain constant-domain switch in the structure and functionality of A17 reactibody.
Ponomarenko N, Chatziefthimiou SD, Kurkova I, Mokrushina Y, Mokrushina Y, Stepanova A, Smirnov I, Avakyan M, Bobik T, Mamedov A, Mitkevich V, Belogurov A Jr, Fedorova OS, Dubina M, Golovin A, Lamzin V, Friboulet A, Makarov AA, Wilmanns M, Gabibov A
Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):708-19. doi: 10.1107/S1399004713032446. Epub 2014 Feb 15.   PUBMED
PMID:24598740

 2013

Visual automated macromolecular model building.
Langer GG, Hazledine S, Wiegels T, Carolan C, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2013 Apr;69(Pt 4):635-41. doi: 10.1107/S0907444913000565. Epub 2013 Mar 14.   PUBMED
PMID:23519672

 2012

Internal structure of an intact Convallaria majalis pollen grain observed with X-ray Fresnel coherent diffractive imaging.
Mancuso AP, Groves MR, Polozhentsev OE, Williams GJ, McNulty I, Antony C, Santarella-Mellwig R, Soldatov AV, Lamzin V, Peele AG, Nugent KA, Vartanyants IA
Opt Express. 2012 Nov 19;20(24):26778-85. doi: 10.1364/OE.20.026778.   PUBMED
PMID:23187532

Purification, biochemical characterization, and structure of recombinant endo-1,4-beta-xylanase XylE.
Fedorova TV, Chulkin AM, Vavilova EA, Maisuradze IG, Trofimov AA, Zorov IN, Khotchenkov VP, Polyakov KM, Benevolensky SV, Koroleva OV, Lamzin VS
Biochemistry (Mosc). 2012 Oct;77(10):1190-8. doi: 10.1134/S0006297912100112.   PUBMED
PMID:23157299

Use of noncrystallographic symmetry for automated model building at medium to low resolution.
Wiegels T, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):446-53. doi: 10.1107/S0907444911050712. Epub 2012 Mar 16.   PUBMED
PMID:22505265

Aspartate aminotransferase: bridging carbohydrate and energy metabolism in Plasmodium falciparum.
Wrenger C, Muller IB, Silber AM, Jordanova R, Lamzin VS, Groves MR
Curr Drug Metab. 2012 Mar;13(3):332-6.   PUBMED
PMID:22455555

Fragmentation-tree density representation for crystallographic modelling of bound ligands.
Langer GG, Evrard GX, Carolan CG, Lamzin VS
J Mol Biol. 2012 Jun 8;419(3-4):211-22. doi: 10.1016/j.jmb.2012.03.012. Epub 2012 Mar 23.   PUBMED
PMID:22446381

 2011

Crystal structure of D-serine dehydratase from Escherichia coli.
Urusova DV, Isupov MN, Antonyuk S, Kachalova GS, Obmolova G, Vagin AA, Lebedev AA, Burenkov GP, Dauter Z, Bartunik HD, Lamzin VS, Melik-Adamyan WR, Mueller TD, Schnackerz KD
Biochim Biophys Acta. 2012 Mar;1824(3):422-32. doi: 10.1016/j.bbapap.2011.10.017. Epub 2011 Nov 27.   PUBMED
PMID:22197591

Amphiphilic nanotubes in the crystal structure of a biosurfactant protein hydrophobin HFBII.
Kallio JM, Rouvinen J
Chem Commun (Camb). 2011 Sep 21;47(35):9843-5. doi: 10.1039/c1cc13139g. Epub 2011 Aug 2.   PUBMED
PMID:21808803

On the routine use of soft X-rays in macromolecular crystallography. Part V. Molecular replacement and anomalous scattering.
Unge J, Mueller-Dieckmann C, Panjikar S, Tucker PA, Lamzin VS, Weiss MS
Acta Crystallogr D Biol Crystallogr. 2011 Aug;67(Pt 8):729-38. doi: 10.1107/S0907444911024887. Epub 2011 Jul 12.   PUBMED
PMID:21795814

Crystallization and preliminary X-ray crystallographic studies of an oligomeric species of a refolded C39 peptidase-like domain of the Escherichia coli ABC transporter haemolysin B.
Schwarz CK, Tschapek B, Jumpertz T, Jenewein S, Lecher J, Willbold D, Panjikar S, Holland IB, Smits SH, Schmitt L
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 May 1;67(Pt 5):630-3. doi: 10.1107/S1744309111010876. Epub 2011 Apr 28.   PUBMED
PMID:21543878

Additional phase information from UV damage of selenomethionine labelled proteins.
de Sanctis D, Tucker PA, Panjikar S
J Synchrotron Radiat. 2011 May;18(Pt 3):374-80. doi: 10.1107/S0909049511004092. Epub 2011 Mar 11.   PUBMED
PMID:21525645

Crystal structure of small protein crambin at 0.48 A resolution.
Schmidt A, Teeter M, Weckert E, Lamzin VS
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Apr 1;67(Pt 4):424-8. doi: 10.1107/S1744309110052607. Epub 2011 Mar 24.   PUBMED
PMID:21505232

Structural characterization of the multidomain regulatory protein Rv1364c from Mycobacterium tuberculosis.
King-Scott J, Konarev PV, Panjikar S, Jordanova R, Svergun DI, Tucker PA
Structure. 2011 Jan 12;19(1):56-69. doi: 10.1016/j.str.2010.11.010.   PUBMED
PMID:21220116

Single isomorphous replacement phasing of selenomethionine-containing proteins using UV-induced radiation damage.
Panjikar S, Mayerhofer H, Tucker PA, Mueller-Dieckmann J, de Sanctis D
Acta Crystallogr D Biol Crystallogr. 2011 Jan;67(Pt 1):32-44. doi: 10.1107/S090744491004299X. Epub 2010 Dec 16.   PUBMED
PMID:21206060

 2010

Structural basis for the oxidation of protein-bound sulfur by the sulfur cycle molybdohemo-enzyme sulfane dehydrogenase SoxCD.
Zander U, Faust A, Klink BU, de Sanctis D, Panjikar S, Quentmeier A, Bardischewsky F, Friedrich CG, Scheidig AJ
J Biol Chem. 2011 Mar 11;286(10):8349-60. doi: 10.1074/jbc.M110.193631. Epub 2010 Dec 8.   PUBMED
PMID:21147779

Crystal structures of Trichoderma reesei beta-galactosidase reveal conformational changes in the active site.
Maksimainen M, Hakulinen N, Kallio JM, Timoharju T, Turunen O, Rouvinen J
J Struct Biol. 2011 Apr;174(1):156-63. doi: 10.1016/j.jsb.2010.11.024. Epub 2010 Dec 3.   PUBMED
PMID:21130883

Specific inhibition of the aspartate aminotransferase of Plasmodium falciparum.
Wrenger C, Muller IB, Schifferdecker AJ, Jain R, Jordanova R, Groves MR
J Mol Biol. 2011 Jan 28;405(4):956-71. doi: 10.1016/j.jmb.2010.11.018. Epub 2010 Nov 16.   PUBMED
PMID:21087616

Quantitive evaluation of macromolecular crystallization experiments using 1,8-ANS fluorescence.
Watts D, Muller-Dieckmann J, Tsakanova G, Lamzin VS, Groves MR
Acta Crystallogr D Biol Crystallogr. 2010 Aug;66(Pt 8):901-8. doi: 10.1107/S0907444910020664. Epub 2010 Jul 10.   PUBMED
PMID:20693689

A moment invariant for evaluating the chirality of three-dimensional objects.
Hattne J, Lamzin VS
J R Soc Interface. 2011 Jan 6;8(54):144-51. doi: 10.1098/rsif.2010.0297. Epub 2010 Aug 4.   PUBMED
PMID:20685692

Purification, crystallization and preliminary X-ray analysis of the aspartate aminotransferase of Plasmodium falciparum.
Jain R, Jordanova R, Muller IB, Wrenger C, Groves MR
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Apr 1;66(Pt 4):409-12. doi: 10.1107/S1744309110003933. Epub 2010 Mar 31.   PUBMED
PMID:20383010

Internal motion in protein crystal structures.
Schmidt A, Lamzin VS
Protein Sci. 2010 May;19(5):944-53. doi: 10.1002/pro.371.   PUBMED
PMID:20198682

 2009

The vitamin B1 metabolism of Staphylococcus aureus is controlled at enzymatic and transcriptional levels.
Muller IB, Bergmann B, Groves MR, Couto I, Amaral L, Begley TP, Walter RD, Wrenger C
PLoS One. 2009 Nov 3;4(11):e7656. doi: 10.1371/journal.pone.0007656.   PUBMED
PMID:19888457

Fatty acid- and retinoid-binding proteins have distinct binding pockets for the two types of cargo.
Jordanova R, Groves MR, Kostova E, Woltersdorf C, Liebau E, Tucker PA
J Biol Chem. 2009 Dec 18;284(51):35818-26. doi: 10.1074/jbc.M109.022731. Epub .   PUBMED
PMID:19828452

On the combination of molecular replacement and single-wavelength anomalous diffraction phasing for automated structure determination.
Panjikar S, Parthasarathy V, Lamzin VS, Weiss MS, Tucker PA
Acta Crystallogr D Biol Crystallogr. 2009 Oct;65(Pt 10):1089-97. doi: 10.1107/S0907444909029643. Epub 2009 Sep 16.   PUBMED
PMID:19770506

Interpretation of very low resolution X-ray electron-density maps using core objects.
Heuser P, Langer GG, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2009 Jul;65(Pt 7):690-6. doi: 10.1107/S090744490901991X. Epub 2009 Jun 20.   PUBMED
PMID:19564689

Structure of native laccase from Trametes hirsuta at 1.8 A resolution.
Polyakov KM, Fedorova TV, Stepanova EV, Cherkashin EA, Kurzeev SA, Strokopytov BV, Lamzin VS, Koroleva OV
Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):611-7. doi: 10.1107/S0907444909011950. Epub 2009 May 15.   PUBMED
PMID:19465775

High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens.
Polyakov KM, Boyko KM, Tikhonova TV, Slutsky A, Antipov AN, Zvyagilskaya RA, Popov AN, Bourenkov GP, Lamzin VS, Popov VO
J Mol Biol. 2009 Jun 26;389(5):846-62. doi: 10.1016/j.jmb.2009.04.037. Epub 2009 Apr 23.   PUBMED
PMID:19393666

Mobility of the conserved glycine 155 is required for formation of the active plasmodial Pdx1 dodecamer.
Knockel J, Jordanova R, Muller IB, Wrenger C, Groves MR
Biochim Biophys Acta. 2009 May;1790(5):347-50. doi: 10.1016/j.bbagen.2009.02.016. Epub 2009 Mar 9.   PUBMED
PMID:19272411

The three-component signalling system HbpS-SenS-SenR as an example of a redox sensing pathway in bacteria.
Ortiz de Orue Lucana D, Groves MR
Amino Acids. 2009 Sep;37(3):479-86. doi: 10.1007/s00726-009-0260-9. Epub 2009 Mar 4.   PUBMED
PMID:19259771

The oligomeric assembly of the novel haem-degrading protein HbpS is essential for interaction with its cognate two-component sensor kinase.
Ortiz de Orue Lucana D, Bogel G, Zou P, Groves MR
J Mol Biol. 2009 Mar 6;386(4):1108-22.   PUBMED
PMID:19244623

 2008

Crystallization and preliminary X-ray analysis of the Thermoplasma acidophilum 20S proteasome in complex with protein substrates.
Felderer K, Groves M, Diez J, Pohl E, Witt S
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Oct 1;64(Pt 10):899-902. doi: 10.1107/S1744309108026791. Epub 2008 Sep 30.   PUBMED
PMID:18931431

Pattern-recognition-based detection of planar objects in three-dimensional electron-density maps.
Hattne J, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2008 Aug;D64(Pt 8):834-42. doi: 10.1107/S0907444908014327. Epub 2008 Jul 17.   PUBMED
PMID:18645232

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.
Langer G, Cohen SX, Lamzin VS, Perrakis A
Nat Protoc. 2008;3(7):1171-9. doi: 10.1038/nprot.2008.91.   PUBMED
PMID:18600222

Methods for protein characterization by mass spectrometry, thermal shift (ThermoFluor) assay, and multiangle or static light scattering.
Nettleship JE, Brown J, Groves MR, Geerlof A
Methods Mol Biol. 2008;426:299-318. doi: 10.1007/978-1-60327-058-8_19.   PUBMED
PMID:18542872

Atomic resolution crystal structures and quantum chemistry meet to reveal subtleties of hydroxynitrile lyase catalysis.
Schmidt A, Gruber K, Kratky C, Lamzin VS
J Biol Chem. 2008 Aug 1;283(31):21827-36. doi: 10.1074/jbc.M801056200. Epub 2008 Jun 4.   PUBMED
PMID:18524775

Crystallization and preliminary characterization of a novel haem-binding protein of Streptomyces reticuli.
Zou P, Groves MR, Viale-Bouroncle SD, Ortiz de Orue Lucana D
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 May 1;64(Pt 5):386-90. doi: 10.1107/S1744309108008348. Epub 2008 Apr 5.   PUBMED
PMID:18453708

A knowledge-driven approach for crystallographic protein model completion.
Joosten K, Cohen SX, Emsley P, Mooij W, Lamzin VS, Perrakis A
Acta Crystallogr D Biol Crystallogr. 2008 Apr;64(Pt 4):416-24. doi: 10.1107/S0907444908001558. Epub 2008 Mar 19.   PUBMED
PMID:18391408

Crystal structure of YagE, a putative DHDPS-like protein from Escherichia coli K12.
Manicka S, Peleg Y, Unger T, Albeck S, Dym O, Greenblatt HM, Bourenkov G, Lamzin V, Krishnaswamy S, Sussman JL
Proteins. 2008 Jun;71(4):2102-8. doi: 10.1002/prot.22023.   PUBMED
PMID:18361457

The assembly of the plasmodial PLP synthase complex follows a defined course.
Muller IB, Knockel J, Groves MR, Jordanova R, Ealick SE, Walter RD, Wrenger C
PLoS One. 2008 Mar 19;3(3):e1815. doi: 10.1371/journal.pone.0001815.   PUBMED
PMID:18350152

 2007

ARP/wARP and molecular replacement: the next generation.
Cohen SX, Ben Jelloul M, Long F, Vagin A, Knipscheer P, Lebbink J, Sixma TK, Lamzin VS, Murshudov GN, Perrakis A
Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):49-60. Epub 2007 Dec 5.   PUBMED
PMID:18094467

High-resolution structures of formate dehydrogenase from Candida boidinii.
Schirwitz K, Schmidt A, Lamzin VS
Protein Sci. 2007 Jun;16(6):1146-56.   PUBMED
PMID:17525463

From atoms to proteins.
Schmidt A, Lamzin VS
Cell Mol Life Sci. 2007 Aug;64(15):1959-69.   PUBMED
PMID:17497239

Structural evidence for a ligand coordination switch in liver alcohol dehydrogenase.
Meijers R, Adolph HW, Dauter Z, Wilson KS, Lamzin VS, Cedergren-Zeppezauer ES
Biochemistry. 2007 May 8;46(18):5446-54. Epub 2007 Apr 13.   PUBMED
PMID:17429946

A method for the general identification of protein crystals in crystallization experiments using a noncovalent fluorescent dye.
Groves MR, Muller IB, Kreplin X, Muller-Dieckmann J
Acta Crystallogr D Biol Crystallogr. 2007 Apr;63(Pt 4):526-35. Epub 2007 Mar 16.   PUBMED
PMID:17372358

 2006

Assessment of automatic ligand building in ARP/wARP.
Evrard GX, Langer GG, Perrakis A, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):108-17. Epub 2006 Dec 13.   PUBMED
PMID:17164533

Automated detection and centring of cryocooled protein crystals.
Pothineni SB, Strutz T, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2006 Nov;62(Pt 11):1358-68. Epub 2006 Oct 18.   PUBMED
PMID:17057339

Purification, crystallization and preliminary X-ray study of the fungal laccase from Cerrena maxima.
Lyashenko AV, Zhukhlistova NE, Gabdoulkhakov AG, Zhukova YN, Voelter W, Zaitsev VN, Bento I, Stepanova EV, Kachalova GS, Koroleva OV, Cherkashyn EA, Tishkov VI, Lamzin VS, Schirwitz K, Morgunova EY, Betzel C, Lindley PF, Mikhailov AM
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Oct 1;62(Pt 10):954-7. Epub 2006 Sep 19.   PUBMED
PMID:17012782

SPINE workshop on automated X-ray analysis: a progress report.
Bahar M, Ballard C, Cohen SX, Cowtan KD, Dodson EJ, Emsley P, Esnouf RM, Keegan R, Lamzin V, Langer G, Levdikov V, Long F, Meier C, Muller A, Murshudov GN, Perrakis A, Siebold C, Stein N, Turkenburg MG, Vagin AA, Winn M, Winter G, Wilson KS
Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1170-83. Epub 2006 Sep 19.   PUBMED
PMID:17001094

X-ray structural studies of the fungal laccase from Cerrena maxima.
Lyashenko AV, Bento I, Zaitsev VN, Zhukhlistova NE, Zhukova YN, Gabdoulkhakov AG, Morgunova EY, Voelter W, Kachalova GS, Stepanova EV, Koroleva OV, Lamzin VS, Tishkov VI, Betzel C, Lindley PF, Mikhailov AM
J Biol Inorg Chem. 2006 Nov;11(8):963-73. Epub 2006 Aug 30.   PUBMED
PMID:16944230

How to avoid premature decay of your macromolecular crystal: a quick soak for long life.
Kauffmann B, Weiss MS, Lamzin VS, Schmidt A
Structure. 2006 Jul;14(7):1099-105.   PUBMED
PMID:16843891

Crystallization and preliminary X-ray analysis of cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens.
Boyko KM, Polyakov KM, Tikhonova TV, Slutsky A, Antipov AN, Zvyagilskaya RA, Bourenkov GP, Popov AN, Lamzin VS, Popov VO
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Mar 1;62(Pt 3):215-7. Epub 2006 Feb 10.   PUBMED
PMID:16511304

 2005

Extraction of functional motion in trypsin crystal structures.
Schmidt A, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1132-9. Epub 2005 Jul 20.   PUBMED
PMID:16041079

Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment.
Panjikar S, Parthasarathy V, Lamzin VS, Weiss MS, Tucker PA
Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):449-57. Epub 2005 Mar 24.   PUBMED
PMID:15805600

 2004

Towards complete validated models in the next generation of ARP/wARP.
Cohen SX, Morris RJ, Fernandez FJ, Ben Jelloul M, Kakaris M, Parthasarathy V, Lamzin VS, Kleywegt GJ, Perrakis A
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2222-9. Epub 2004 Nov 26.   PUBMED
PMID:15572775

Modelling bound ligands in protein crystal structures.
Zwart PH, Langer GG, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2230-9. Epub 2004 Nov 26.   PUBMED
PMID:15572776

The crystal structure of glutamyl endopeptidase from Bacillus intermedius reveals a structural link between zymogen activation and charge compensation.
Meijers R, Blagova EV, Levdikov VM, Rudenskaya GN, Chestukhina GG, Akimkina TV, Kostrov SV, Lamzin VS, Kuranova IP
Biochemistry. 2004 Mar 16;43(10):2784-91.   PUBMED
PMID:15005613

The influence of positional errors on the Debye effects.
Zwart PH, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2004 Feb;60(Pt 2):220-6. Epub 2004 Jan 23.   PUBMED
PMID:14747697

 2003

ARP/wARP and automatic interpretation of protein electron density maps.
Morris RJ, Perrakis A, Lamzin VS
Methods Enzymol. 2003;374:229-44.   PUBMED
PMID:14696376

Distance distributions and electron-density characteristics of protein models.
Zwart PH, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2003 Dec;59(Pt 12):2104-13. Epub 2003 Nov 27.   PUBMED
PMID:14646068

Breaking good resolutions with ARP/wARP.
Morris RJ, Zwart PH, Cohen S, Fernandez FJ, Kakaris M, Kirillova O, Vonrhein C, Perrakis A, Lamzin VS
J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):56-9. Epub 2003 Nov 28.   PUBMED
PMID:14646134

Trypsin revisited: crystallography AT (SUB) atomic resolution and quantum chemistry revealing details of catalysis.
Schmidt A, Jelsch C, Ostergaard P, Rypniewski W, Lamzin VS
J Biol Chem. 2003 Oct 31;278(44):43357-62. Epub 2003 Aug 22.   PUBMED
PMID:12937176

The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology.
Terwilliger TC, Park MS, Waldo GS, Berendzen J, Hung LW, Kim CY, Smith CV, Sacchettini JC, Bellinzoni M, Bossi R, De Rossi E, Mattevi A, Milano A, Riccardi G, Rizzi M, Roberts MM, Coker AR, Fossati G, Mascagni P, Coates AR, Wood SP, Goulding CW, Apostol MI, Anderson DH, Gill HS, Eisenberg DS, Taneja B, Mande S, Pohl E, Lamzin V, Tucker P, Wilmanns M, Colovos C, Meyer-Klaucke W, Munro AW, McLean KJ, Marshall KR, Leys D, Yang JK, Yoon HJ, Lee BI, Lee MG, Kwak JE, Han BW, Lee JY, Baek SH, Suh SW, Komen MM, Arcus VL, Baker EN, Lott JS, Jacobs W Jr, Alber T, Rupp B
Tuberculosis (Edinb). 2003;83(4):223-49.   PUBMED
PMID:12906835

Crystallization and preliminary X-ray analysis of a four-copper laccase from Coriolus hirsutus.
Pegasova TV, Zwart P, Koroleva OV, Stepanova EV, Rebrikov DV, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1459-61. Epub 2003 Jul 23.   PUBMED
PMID:12876350

 2002

Veni, vidi, vici - atomic resolution unravelling the mysteries of protein function.
Schmidt A, Lamzin VS
Curr Opin Struct Biol. 2002 Dec;12(6):698-703.   PUBMED
PMID:12504672

Advantages of high-resolution phasing: MAD to atomic resolution.
Schmidt A, Gonzalez A, Morris RJ, Costabel M, Alzari PM, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2002 Sep;58(Pt 9):1433-41. Epub 2002 Aug 23.   PUBMED
PMID:12198299

Atomic resolution data reveal flexibility in the structure of RNase Sa.
Sevcik J, Lamzin VS, Dauter Z, Wilson KS
Acta Crystallogr D Biol Crystallogr. 2002 Aug;58(Pt 8):1307-13. Epub 2002 Jul 20.   PUBMED
PMID:12136142

Domain closure, substrate specificity and catalysis of D-lactate dehydrogenase from Lactobacillus bulgaricus.
Razeto A, Kochhar S, Hottinger H, Dauter M, Wilson KS, Lamzin VS
J Mol Biol. 2002 Apr 19;318(1):109-19.   PUBMED
PMID:12054772

ARP/wARP's model-building algorithms. I. The main chain.
Morris RJ, Perrakis A, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2002 Jun;58(Pt 6 Pt 2):968-75. Epub 2002 May 29.   PUBMED
PMID:12037299

Atomic (0.94 A) resolution structure of an inverting glycosidase in complex with substrate.
Guerin DM, Lascombe MB, Costabel M, Souchon H, Lamzin V, Beguin P, Alzari PM
J Mol Biol. 2002 Mar 8;316(5):1061-9.   PUBMED
PMID:11884144

Atomic resolution structures of ribonuclease A at six pH values.
Berisio R, Sica F, Lamzin VS, Wilson KS, Zagari A, Mazzarella L
Acta Crystallogr D Biol Crystallogr. 2002 Mar;58(Pt 3):441-50. Epub 2002 Feb 21.   PUBMED
PMID:11856829

The structures of Escherichia coli inorganic pyrophosphatase complexed with Ca(2+) or CaPP(i) at atomic resolution and their mechanistic implications.
Samygina VR, Popov AN, Rodina EV, Vorobyeva NN, Lamzin VS, Polyakov KM, Kurilova SA, Nazarova TI, Avaeva SM
J Mol Biol. 2001 Nov 30;314(3):633-45.   PUBMED
PMID:11846572

Site-directed mutagenesis of the essential arginine of the formate dehydrogenase active centre.
Galkin AG, Kutsenko AS, Bajulina NP, Esipova NG, Lamzin VS, Mesentsev AV, Shelukho DV, Tikhonova TV, Tishkov VI, Ustinnikova TB, Popov VO
Biochim Biophys Acta. 2002 Jan 31;1594(1):136-49.   PUBMED
PMID:11825616

 2001

Crystal structure of manganese catalase from Lactobacillus plantarum.
Barynin VV, Whittaker MM, Antonyuk SV, Lamzin VS, Harrison PM, Artymiuk PJ, Whittaker JW
Structure. 2001 Aug;9(8):725-38.   PUBMED
PMID:11587647

ARP/wARP and molecular replacement.
Perrakis A, Harkiolaki M, Wilson KS, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 2001 Oct;57(Pt 10):1445-50. Epub 2001 Sep 21.   PUBMED
PMID:11567158

Protein crystal growth in the Advanced Protein Crystallization Facility on the LMS mission: a comparison of Sulfolobus solfataricus alcohol dehydrogenase crystals grown on the ground and in microgravity.
Esposito L, Sica F, Sorrentino G, Berisio R, Carotenuto L, Giordano A, Raia CA, Rossi M, Lamzin VS, Wilson KS, Zagari A
Acta Crystallogr D Biol Crystallogr. 1998 May 1;54(Pt 3):386-90.   PUBMED
PMID:11541089

On the mechanism of biological methane formation: structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding.
Grabarse W, Mahlert F, Duin EC, Goubeaud M, Shima S, Thauer RK, Lamzin V, Ermler U
J Mol Biol. 2001 May 25;309(1):315-30.   PUBMED
PMID:11491299

Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii.
Tishchenko S, Nikulin A, Fomenkova N, Nevskaya N, Nikonov O, Dumas P, Moine H, Ehresmann B, Ehresmann C, Piendl W, Lamzin V, Garber M, Nikonov S
J Mol Biol. 2001 Aug 10;311(2):311-24.   PUBMED
PMID:11478863

Non-covalent interactions in the crystallization of the enantiomers of 1,7-dioxaspiro.
Makedonopoulou S, Yannakopoulou K, Mentzafos D, Lamzin V, Popov A, Mavridis IM
Acta Crystallogr B. 2001 Jun;57(Pt 3):399-409. Epub 2001 Jun 1.   PUBMED
PMID:11373401

Transthyretin stability as a key factor in amyloidogenesis: X-ray analysis at atomic resolution.
Sebastiao MP, Lamzin V, Saraiva MJ, Damas AM
J Mol Biol. 2001 Mar 2;306(4):733-44.   PUBMED
PMID:11243784

On the enzymatic activation of NADH.
Meijers R, Morris RJ, Adolph HW, Merli A, Lamzin VS, Cedergren-Zeppezauer ES
J Biol Chem. 2001 Mar 23;276(12):9316-21. Epub 2000 Dec 28.   PUBMED
PMID:11134046

 2000

Current state of automated crystallographic data analysis.
Lamzin VS, Perrakis A
Nat Struct Biol. 2000 Nov;7 Suppl:978-81.   PUBMED
PMID:11104005

Apotheosis, not apocalypse: methods in protein crystallography.
Lamzin VS, Perrakis A, Bricogne G, Jiang J, Swaminathan S, Sussman JL
Acta Crystallogr D Biol Crystallogr. 2000 Nov;56(Pt 11):1510-1.   PUBMED
PMID:11053868

Structural basis for substrate specificity differences of horse liver alcohol dehydrogenase isozymes.
Adolph HW, Zwart P, Meijers R, Hubatsch I, Kiefer M, Lamzin V, Cedergren-Zeppezauer E
Biochemistry. 2000 Oct 24;39(42):12885-97.   PUBMED
PMID:11041853

Improving the X-ray resolution by reversible flash-cooling combined with concentration screening, as exemplified with PPase.
Samygina VR, Antonyuk SV, Lamzin VS, Popov AN
Acta Crystallogr D Biol Crystallogr. 2000 May;56(Pt 5):595-603.   PUBMED
PMID:10771429

Accurate protein crystallography at ultra-high resolution: valence electron distribution in crambin.
Jelsch C, Teeter MM, Lamzin V, Pichon-Pesme V, Blessing RH, Lecomte C
Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3171-6.   PUBMED
PMID:10737790

Roles of his205, his296, his303 and Asp259 in catalysis by NAD+-specific D-lactate dehydrogenase.
Kochhar S, Lamzin VS, Razeto A, Delley M, Hottinger H, Germond JE
Eur J Biochem. 2000 Mar;267(6):1633-9.   PUBMED
PMID:10712593

 1999

Crystal structure of the EF-hand parvalbumin at atomic resolution (0.91 A) and at low temperature (100 K). Evidence for conformational multistates within the hydrophobic core.
Declercq JP, Evrard C, Lamzin V, Parello J
Protein Sci. 1999 Oct;8(10):2194-204.   PUBMED
PMID:10548066

Ab initio solution and refinement of two high-potential iron protein structures at atomic resolution.
Parisini E, Capozzi F, Lubini P, Lamzin V, Luchinat C, Sheldrick GM
Acta Crystallogr D Biol Crystallogr. 1999 Nov;55(Pt 11):1773-84.   PUBMED
PMID:10531472

Protein titration in the crystal state.
Berisio R, Lamzin VS, Sica F, Wilson KS, Zagari A, Mazzarella L
J Mol Biol. 1999 Oct 1;292(4):845-54.   PUBMED
PMID:10525410

Ab initio structure solution of a dimeric cytochrome c3 from Desulfovibrio gigas containing disulfide bridges.
Frazao C, Sieker L, Sheldrick G, Lamzin V, LeGall J, Carrondo MA
J Biol Inorg Chem. 1999 Apr;4(2):162-5.   PUBMED
PMID:10499086

Molecular, crystal and solution structure of a beta-cyclodextrin complex with the bromide salt of 2-(3-dimethylaminopropyl)tricyclo[3.3.1.1(3,7)]decan-2-ol, a potent antimicrobial drug.
Perrakis A, Antoniadou-Vyza E, Tsitsa P, Lamzin VS, Wilson KS, Hamodrakas SJ
Carbohydr Res. 1999 Apr 30;317(1-4):19-28.   PUBMED
PMID:10498440

Experimental observation of bonding electrons in proteins.
Lamzin VS, Morris RJ, Dauter Z, Wilson KS, Teeter MM
J Biol Chem. 1999 Jul 23;274(30):20753-5.   PUBMED
PMID:10409612

Automated protein model building combined with iterative structure refinement.
Perrakis A, Morris R, Lamzin VS
Nat Struct Biol. 1999 May;6(5):458-63.   PUBMED
PMID:10331874

 1998

Accelerated X-ray structure elucidation of a 36 kDa muramidase/transglycosylase using wARP.
Van Asselt EJ, Perrakis A, Kalk KH, Lamzin VS, Dijkstra BW
Acta Crystallogr D Biol Crystallogr. 1998 Jan 1;54(Pt 1):58-73.   PUBMED
PMID:9761817

Refinement of triclinic hen egg-white lysozyme at atomic resolution.
Walsh MA, Schneider TR, Sieker LC, Dauter Z, Lamzin VS, Wilson KS
Acta Crystallogr D Biol Crystallogr. 1998 Jul 1;54(Pt 4):522-46.   PUBMED
PMID:9761848

Validation tools: can they indicate the information content of macromolecular crystal structures?
Dodson EJ, Davies GJ, Lamzin VS, Murshudov GN, Wilson KS
Structure. 1998 Jun 15;6(6):685-90.   PUBMED
PMID:9655828

The structure of SAICAR synthase: an enzyme in the de novo pathway of purine nucleotide biosynthesis.
Levdikov VM, Barynin VV, Grebenko AI, Melik-Adamyan WR, Lamzin VS, Wilson KS
Structure. 1998 Mar 15;6(3):363-76.   PUBMED
PMID:9551557

Conserved supersecondary structural motif in NAD-dependent dehydrogenases.
Kutzenko AS, Lamzin VS, Popov VO
FEBS Lett. 1998 Feb 13;423(1):105-9.   PUBMED
PMID:9506850

 1997

The 1.8 A crystal structure of the dimeric peroxisomal 3-ketoacyl-CoA thiolase of Saccharomyces cerevisiae: implications for substrate binding and reaction mechanism.
Mathieu M, Modis Y, Zeelen JP, Engel CK, Abagyan RA, Ahlberg A, Rasmussen B, Lamzin VS, Kunau WH, Wierenga RK
J Mol Biol. 1997 Oct 31;273(3):714-28.   PUBMED
PMID:9402066

The benefits of atomic resolution.
Dauter Z, Lamzin VS, Wilson KS
Curr Opin Struct Biol. 1997 Oct;7(5):681-8.   PUBMED
PMID:9345627

wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models.
Perrakis A, Sixma TK, Wilson KS, Lamzin VS
Acta Crystallogr D Biol Crystallogr. 1997 Jul 1;53(Pt 4):448-55.   PUBMED
PMID:15299911

Atomic resolution (1.0 A) crystal structure of Fusarium solani cutinase: stereochemical analysis.
Longhi S, Czjzek M, Lamzin V, Nicolas A, Cambillau C
J Mol Biol. 1997 May 16;268(4):779-99.   PUBMED
PMID:9175860

Effect of pH on kinetic parameters of NAD+-dependent formate dehydrogenase.
Mesentsev AV, Lamzin VS, Tishkov VI, Ustinnikova TB, Popov VO
Biochem J. 1997 Jan 15;321 ( Pt 2):475-80.   PUBMED
PMID:9020883

Automated refinement for protein crystallography.
Lamzin VS, Wilson KS
Methods Enzymol. 1997;277:269-305.   PUBMED
PMID:18488314

 1996

Structure of the Val122Ile variant transthyretin - a cardiomyopathic mutant.
Damas AM, Ribeiro S, Lamzin VS, Palha JA, Saraiva MJ
Acta Crystallogr D Biol Crystallogr. 1996 Sep 1;52(Pt 5):966-72.   PUBMED
PMID:15299606

Site-directed mutagenesis of the formate dehydrogenase active centre: role of the His332-Gln313 pair in enzyme catalysis.
Tishkov VI, Matorin AD, Rojkova AM, Fedorchuk VV, Savitsky PA, Dementieva LA, Lamzin VS, Mezentzev AV, Popov VO
FEBS Lett. 1996 Jul 15;390(1):104-8.   PUBMED
PMID:8706817

X-ray structure of yeast inorganic pyrophosphatase complexed with manganese and phosphate.
Harutyunyan EH, Kuranova IP, Vainshtein BK, Hohne WE, Lamzin VS, Dauter Z, Teplyakov AV, Wilson KS
Eur J Biochem. 1996 Jul 1;239(1):220-8.   PUBMED
PMID:8706712

A self-validation technique for protein structure refinement: the extended Hamilton test.
Bacchi A, Lamzin VS, Wilson KS
Acta Crystallogr D Biol Crystallogr. 1996 Jul 1;52(Pt 4):641-6.   PUBMED
PMID:15299627

Ribonuclease from Streptomyces aureofaciens at atomic resolution.
Sevcik J, Dauter Z, Lamzin VS, Wilson KS
Acta Crystallogr D Biol Crystallogr. 1996 Mar 1;52(Pt 2):327-44.   PUBMED
PMID:15299705

How to escape from model bias with a high-resolution native data set - structure determination of the PcpA-S6 subunit III.
Pignol D, Gaboriaud C, Fontecilla-Camps JC, Lamzin VS, Wilson KS
Acta Crystallogr D Biol Crystallogr. 1996 Mar 1;52(Pt 2):345-55.   PUBMED
PMID:15299706

 1995

Proteins at atomic resolution.
Dauter Z, Lamzin VS, Wilson KS
Curr Opin Struct Biol. 1995 Dec;5(6):784-90.   PUBMED
PMID:8749366

How nature deals with stereoisomers.
Lamzin VS, Dauter Z, Wilson KS
Curr Opin Struct Biol. 1995 Dec;5(6):830-6.   PUBMED
PMID:8749373

 1994

Crystallization and preliminary X-ray analysis of a new crystal form of nitrite reductase from Pseudomonas aeruginosa.
Tegoni M, Silvestrini MC, Lamzin VS, Brunori M, Cambillau C
J Mol Biol. 1994 Oct 21;243(2):347-50.   PUBMED
PMID:7932760

NAD(+)-dependent formate dehydrogenase.
Popov VO, Lamzin VS
Biochem J. 1994 Aug 1;301 ( Pt 3):625-43.   PUBMED
PMID:8053888

Dehydrogenation through the looking-glass.
Lamzin VS, Dauter Z, Wilson KS
Nat Struct Biol. 1994 May;1(5):281-2.   PUBMED
PMID:7664032

High resolution structures of holo and apo formate dehydrogenase.
Lamzin VS, Dauter Z, Popov VO, Harutyunyan EH, Wilson KS
J Mol Biol. 1994 Feb 25;236(3):759-85.   PUBMED
PMID:8114093

 1993

Structure of the proteinase inhibitor eglin c with hydrolysed reactive centre at 2.0 A resolution.
Betzel C, Dauter Z, Genov N, Lamzin V, Navaza J, Schnebli HP, Visanji M, Wilson KS
FEBS Lett. 1993 Feb 15;317(3):185-8.   PUBMED
PMID:8425603

Automated refinement of protein models.
Lamzin VS, Wilson KS
Acta Crystallogr D Biol Crystallogr. 1993 Jan 1;49(Pt 1):129-47.   PUBMED
PMID:15299554

 1992

Crystal structure of NAD-dependent formate dehydrogenase.
Lamzin VS, Aleshin AE, Strokopytov BV, Yukhnevich MG, Popov VO, Harutyunyan EH, Wilson KS
Eur J Biochem. 1992 Jun 1;206(2):441-52.   PUBMED
PMID:1597184

 1990

NAD-dependent formate dehydrogenase from methylotrophic bacteria Pseudomonas sp. 101. I. Amino acid sequence].
Popov VO, Shumilin IA, Ustinnikova TB, Lamzin VS, Egorov TsA
Bioorg Khim. 1990 Mar;16(3):324-35.   PUBMED
PMID:2357236

NAD-dependent formate dehydrogenase of methylotrophic bacteria Pseudomonas sp. 101. II. Enzyme conformation at 3.0 A resolution].
Lamzin VS, Aleshin AE, Popov BO, Arutiunian EG
Bioorg Khim. 1990 Mar;16(3):336-44.   PUBMED
PMID:2357237

NAD-dependent formate dehydrogenase of methylotrophic bacteria Pseudomonas sp. 101. III. Comparative analysis].
Lamzin VS, Aleshin AE, Shumilin IA, Ustinnikova TB, Egorov TsA, Arutiunian EG, Popov VO
Bioorg Khim. 1990 Mar;16(3):345-57.   PUBMED
PMID:2357238

Mapping of the immunodominant regions of the NAD-dependent formate dehydrogenase.
Bogdanova AV, Cherednikova TV, Egorov TA, Harutyunyan EG, Kurochkina NA, Lamzin VS, Savitskiy AP, Shumilin IA, Popov VO
FEBS Lett. 1990 Jan 29;260(2):297-300.   PUBMED
PMID:1688814

 1987

X-ray analysis of bacterial NAD-dependent formate dehydrogenase at resolution of 5 angstroms].
Aleshin AE, Lamzin VS, Devedzhiev IaD, Rubinskii SV, Popov VO
Dokl Akad Nauk SSSR. 1987;294(4):973-6.   PUBMED
PMID:3622226

 1986

Conformation changes in bacterial formate dehydrogenase during complex-formation with cofactor and its analogs].
Lamzin VS, Asadchikov VE, Popov VO, Egorov AM, Berezin IV
Dokl Akad Nauk SSSR. 1986;291(4):1011-4.   PUBMED
PMID:3803183

Crystallization and preliminary X-ray diffraction study of bacterial formate dehydrogenase].
Devedzhiev Ia, Moroz OV, Arutiunian EG, Lamzin VS, Egorov AM
Dokl Akad Nauk SSSR. 1986;286(3):757-60.   PUBMED
PMID:3948679

 1985

Modification of bacterial formate dehydrogenase by a mercarbide electron-dense label. X-ray determination of the space between active centers of the enzyme].
Lamzin VS, Asadchikov VE, Egorov AM, Marakushev SA, Popov VO
Dokl Akad Nauk SSSR. 1985;281(3):712-5.   PUBMED
PMID:3926445

 1900

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