The database of published cross-link datasets mapped to structures.
Download entire database or select one from the below table.
To open these datasets you need UCSF Chimera and Xlink Analyzer installed. See the documentation.
Do you want to provide a new dataset for this database? Contact Jan Kosinski kosinski@embl.de
| RNA polymerase I |  |
Crosslinks: Kosinski et al. 2015 Structure: X-ray |
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| RNA polymerase II |  |
Crosslinks: Chen et al. 2010 Structure: X-ray |
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| Bovine RNA polymerase II |  |
Crosslinks: Bernecky et al. 2016 Structure: Cryo-EM |
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| RNA polymerase III |  |
Crosslinks: Wu et al. 2012 Structure: Cryo-EM |
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| TFIIIC |  |
Crosslinks: Male et al. 2015 Structure: Subunit PDB and homology modeling structures |
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| Rvb1-Rvb2 |  |
Crosslinks: Tosi et al. 2013 Structure: Homology model |
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| Influenza RNA polymerase |  |
Crosslinks: Thierry et al. 2016 |
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| Human Nuclear Pore |  |
Crosslinks: Bui et al. 2013 Structure: Cryo-EM |
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| Condensin (SMC2-SMC4) complex |  |
Crosslinks: Barysz et al. 2015 |
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| GroEL-GroES |  |
Crosslinks: Trnka et al. 2010 Structure: X-ray |
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| Proteasome lid |  |
Crosslinks: Politis et al. 2014 Structure: X-ray |
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| Complex of the SRP GTPaseses Ffh and FtsY |  |
Crosslinks: Chu et al. 2004 Structure: X-ray |
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| ATPase domain of human heat shock 70kDa protein 1 |  |
Crosslinks: Herzog, F. et al. 2012 Structure: X-ray |
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| Protein Phosphatase 2A Holoenzyme with B55 subunit |  |
Crosslinks: Herzog, F. et al. 2012 Structure: X-ray |
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| Carbamoyl phosphate synthetase |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Isocitrate dehydrogenase |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Exonuclease III |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Human serum albumin |  |
Crosslinks: Huang et al. 2005 via XLdb Structure: X-ray |
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| Asymmetric chaperonin complex GROEL/GROES/(ADP)7 |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Bovine lactoferrin |  |
Crosslinks: Leitner, A. et al. 2012 via XLdb Structure: X-ray |
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| Bovine beta-lactoglobulin |  |
Crosslinks: Zelter et al. 2010 via XLdb Structure: X-ray |
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| Human PIN/LC8 dimer |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| E. coli serine hydroxymethyltransferase |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| E. coli cofactor-dependent phosphoglycerate mutase |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Elongation factor complex EF-TU/EF-TS from E. coli |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| E. coli malate dehydrogenase |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Bovine rhodopsin |  |
Crosslinks: Jacobsen et al. 2006 via XLdb Structure: X-ray |
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| Polypeptide chain release factor 2 (RF2) from E. coli |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Horse heart cytochrome c |  |
Crosslinks: Seebacher et al. 2006 via XLdb Structure: X-ray |
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| E. coli transaldolase B mutant N35A |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Mutant of ribosome recycling factor from E. coli/td> |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| BRCA1/BARD1 RING-domain heterodimer |  |
Crosslinks: Zelter et al. 2010 via XLdb Structure: NMR |
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| Human PPAR-alpha ligand-binding domain in complex with an antagonist GW6471 and a SMRT corepressor motif |  |
Crosslinks: Mueller et al. 2009 via XLdb Structure: X-ray |
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| Oxymyoglobin |  |
Crosslinks: Seebacher et al. 2006 via XLdb Structure: X-ray |
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| Transketolase |  |
Structure: X-ray |
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| Transition state analog complex of muscle creatine kinase (R134K) mutant |  |
Crosslinks: Leitner, A. et al. 2012 via XLdb Structure: X-ray |
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| E7_C/Im7_C complex; a computationally designed interface between the colicin E7 DNase and the Im7 Immunity protei |
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Crosslinks: Seebacher et al. 2006 via XLdb Structure: X-ray |
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| Putative peptidase T |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Ribosome from Escherichia coli in complex with the antibiotic kasugamyin |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| E. coli trigger factor |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Subunit binding domain (hbSBD) of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: NMR |
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| Bovine B-lactoglobulin A |  |
Crosslinks: Seebacher et al. 2006 via XLdb Structure: X-ray |
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| E. coli RNA polymerase beta' G/G' insert |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Ribosome from E. coli |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| Calmodulin-target peptide complex |  |
Crosslinks: Kalkhof et al. 2005 via XLdb Structure: X-ray |
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| E. coli tryptophanase |  |
Crosslinks: Rinner et al. 2008 via XLdb Structure: X-ray |
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| B domain from human propionyl-CoA carboxylase alpha subunit |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: NMR |
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| Aluminum-Bound Ovotransferrin |  |
Crosslinks: Leitner, A. et al. 2012 via XLdb Structure: X-ray |
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| SET/TAF-1beta/INHAT |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| RUH-072, an apo-biotnyl domain form human acetyl coenzyme A carboxylase |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: NMR |
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| Muscle pyruvate kinase |  |
Crosslinks: Leitner, A. et al. 2012 via XLdb Structure: X-ray |
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| S65A Y66F GFP variant |  |
Crosslinks: Zelter et al. 2010 via XLdb Structure: X-ray |
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| Hen egg-white lysozyme |  |
Crosslinks: Seebacher et al. 2006 via XLdb Structure: X-ray |
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| Human calcium-calmodulin-dependent protein kinase II gamma |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| Human calcium calmodulin dependent protein kinase II delta isoform 1 |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| Human Pyruvate Carboxylase |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| Human calcium/calmodulin-dependent protein kinase IIB isoform 1 |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| Complex between PP2A-specific methylesterase PME-1 and PP2A core enzyme |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| D33S mutant fructose-1,6-bisphosphate aldolase from rabbit muscle |  |
Crosslinks: Leitner, A. et al. 2012 via XLdb Structure: X-ray |
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| Sgo1 and an AB'C PP2A holoenzyme complex |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| Hsc70/Bag1 in complex with ATP |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| Coil 1A of human vimentin |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| Heat shock protein 5 (BiP/GRP78) ATPase domain |  |
Crosslinks: Herzog, F. et al. 2012 via XLdb Structure: X-ray |
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| P93G variant of ribonuclease A |  |
Crosslinks: Seebacher et al. 2006 via XLdb Structure: X-ray |
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| Beef liver catalase |  |
Crosslinks: Leitner, A. et al. 2012 via XLdb Structure: X-ray |
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| Bovine Serum Albumin |  |
Crosslinks: Leitner, A. et al. 2012 via XLdb Structure: X-ray |
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| Human basic fibroblast growth factor |  |
Crosslinks: Young et al. 2000 via XLdb Structure: X-ray |
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References/sources:
Please cite Xlink Analyzer and sources and references listed in README.txt files of these projects.