- improved project setup interface
- interactive docking mode
- buttons to selectively move a particular subunit, domain or subcomplex
- real-time update of the cross-link display and coloring
- new interface to manage subunits, domains, and subcomplexes
- a database of Xlink Analyzer projects for published cross-link datasets
- an interface to defining subcomplexes
- auto-generation of Xlink Analyzer projects based on structures
- get_distances.py script for calculating satisfied cross-links from command line
- several bug fixes
New features in Xlink Analyzer version 1.1