EMBL Hamburg c/o DESY, Notkestraße 85, 22607 Hamburg, Germany

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Publications

Total: 14 publication(s)

2016

Panjkovich A, Svergun DI. (2016)

SASpy: a PyMOL plugin for manipulation and refinement of hybrid models against small angle X-ray scattering data.

Bioinformatics doi:10.1093/bioinformatics/btw071
Europe PMC | doi

Kikhney AG, Panjkovich A, Sokolova AV, Svergun DI. (2016)

DARA: a web server for rapid search of structural neighbours using solution small angle X-ray scattering data.

Bioinformatics 32(4):616-618. doi:10.1093/bioinformatics/btv611
Europe PMC | doi

Panjkovich A, Svergun DI. (2016)

Deciphering conformational transitions of proteins by small angle X-ray scattering and normal mode analysis.

Phys Chem Chem Phys 18(8):5707-5719. doi:10.1039/c5cp04540a
Europe PMC | doi


2014

Palacios-Prado N, Chapuis S, Panjkovich A, Fregeac J, Nagy JI, Bukauskas FF. (2014)

Molecular determinants of magnesium-dependent synaptic plasticity at electrical synapses formed by connexin36

Nat Commun 5:Article No:4667. doi:10.1038/ncomms5667
Europe PMC | doi

Panjkovich A, Daura X. (2014)

PARS: a web server for the prediction of Protein Allosteric and Regulatory Sites

Bioinformatics 30(9):1314-1315. doi:10.1093/bioinformatics/btu002
Europe PMC | doi

Panjkovich A, Gibert I, Daura X. (2014)

antibacTR: dynamic antibacterial-drug-target ranking integrating comparative genomics, structural analysis and experimental annotation

BMC Genomics 15:36. doi:10.1186/1471-2164-15-36
Europe PMC | doi


2012

Panjkovich A, Daura X. (2012)

Exploiting protein flexibility to predict the location of allosteric sites

BMC Bioinformatics 13:273. doi:10.1186/1471-2105-13-273
Europe PMC | doi


2011

Stein A, Rueda M, Panjkovich A, Orozco M, Aloy P. (2011)

A systematic study of the energetics involved in structural changes upon association and connectivity in protein interaction networks

Structure 19(6):881-889. doi:10.1016/j.str.2011.03.009
Europe PMC | doi


2010

Panjkovich A, Aloy P. (2010)

Predicting protein-protein interaction specificity through the integration of three-dimensional structural information and the evolutionary record of protein domains

Mol Biosyst 6(4):741-749. doi:10.1039/b918395g
Europe PMC | doi

Panjkovich A, Daura X. (2010)

Assessing the structural conservation of protein pockets to study functional and allosteric sites: implications for drug discovery

BMC Struct. Biol. 10:9. doi:10.1186/1472-6807-10-9
Europe PMC | doi


2009

Stein A, Panjkovich A, Aloy P. (2009)

3did Update: domain-domain and peptide-mediated interactions of known 3D structure

Nucleic Acids Res. 37(Database issue):D300-4. doi:10.1093/nar/gkn690
Europe PMC | doi


2008

Panjkovich A, Melo F, Marti-Renom MA. (2008)

Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs

Genome Biol. 9(4):R68. doi:10.1186/gb-2008-9-4-r68
Europe PMC | doi


2005

Panjkovich A, Norambuena T, Melo F. (2005)

dnaMATE: a consensus melting temperature prediction server for short DNA sequences

Nucleic Acids Res. 33(Web Server issue):W570-2. doi:10.1093/nar/gki379
Europe PMC | doi

Panjkovich A, Melo F. (2005)

Comparison of different melting temperature calculation methods for short DNA sequences

Bioinformatics 21(6):711-722. doi:10.1093/bioinformatics/bti066
Europe PMC | doi