Publications

Download selected group publications

• Molodenskiy, D.S., Svergun, D.I., Kikhney, A.G. (2022)
  Artificial neural networks for solution scattering data analysis Structure 30 (6), 900-908.e2 DOI
• Konarev, P.V., Graewert, M.A., Jeffries, C.M., Fukuda, M., Cheremnykh, T.A., Volkov, V.V., Svergun, D.I.(2022)
  EFAMIX, a tool to decompose inline chromatography SAXS data from partially overlapping components Protein science 31, 269-282 DOI
• Manalastas-Cantos, K., Konarev, P.V., Hajizadeh, N.R., Kikhney, A.G., Petoukhov, M.V., Molodenskiy, D.S., Panjkovich, A., Mertens, H.D.T., Gruzinov, A., Borges, C., Jeffries, C.M., Svergun, D.I., Franke, D. (2021)
  ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis J. Appl. Cryst. 54, 343–355 DOI
• Konarev, P.V., Gruzinov, A.Yu., Mertens, H.D.T., Svergun, D.I.(2021)
  Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data J. Appl. Cryst. 54, 169-179 DOI   SASBDB
• Graewert, M. A., Da Vela, S., Gräwert, T. W., Molodenskiy, D. S., Blanchet, C. E., Svergun, D. I., Jeffries, C. M. (2020)
  Adding size exclusion chromatography (SEC) and light scattering (LS) devices to obtain high-quality small angle X-ray scattering (SAXS) data Crystals 10(11), 975 DOI
• Graewert, M.A. and Svergun, D.I. (2020)
  A beginner's guide to solution small-angle X-ray scattering (SAXS) Biochem (Lond) 42(1), 36-42 DOI
• Kikhney AG, Borges CR, Molodenskiy DS, Jeffries CM, Svergun DI (2020)
  SASBDB: Towards an automatically curated and validated repository for biological scattering data Protein Science 29(1), 66-75 DOI   SASBDB
• Konarev PV, Svergun DI. (2018)
  Direct shape determination of intermediates in evolving macromolecular solutions from small-angle scattering data IUCrJ 5(4), 402-409 DOI
• Franke D, Jeffries CM, Svergun DI. (2018)
  Machine Learning Methods for X-Ray Scattering Data Analysis from Biomacromolecular Solutions Biophys. J. 114(11), 2485-2492 DOI   SASBDB
• Hajizadeh NR, Franke D, Svergun DI (2018)
  Integrated beamline control and data acquisition for small-angle X-ray scattering at the P12 BioSAXS beamline at PETRAIII storage ring DESY J. Synchrotron Rad. 25, 906-914 DOI
• Hajizadeh NR, Franke D, Jeffries CM, Svergun DI (2018)
  Consensus Bayesian assessment of protein molecular mass from solution X-ray scattering data Sci. Rep. 8:7204 DOI
• Franke, D., Petoukhov, M.V., Konarev, P.V., Panjkovich, A., Tuukkanen, A., Mertens, H.D.T., Kikhney, A.G., Hajizadeh, N.R., Franklin, J.M., Jeffries, C.M. and Svergun, D.I. (2017)
  ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions J. Appl. Cryst. 50, 1212-1225 © IUCr DOI
• Panjkovich, A. and Svergun, D.I. (2017)
  CHROMIXS: automatic and interactive analysis of chromatography-coupled small angle X-ray scattering data Bioinformatics, 34(11), 1944-1946 DOI
• Mertens, H.D.T. and Svergun, D.I. (2017)
  Combining NMR and small angle X-ray scattering for the study of biomolecular structure and dynamics Arch. Biochem. Biophys. 628, 33-41 DOI
• Jeffries, C.M., Graewert, M.A., Blanchet, C.E., Langley, D.B., Whitten A.E. and Svergun, D.I. (2016)
  Preparing monodisperse macromolecular samples for successful biological small-angle X-ray and neutron-scattering experiments Nat. Protoc. 11, 2122-2153 DOI   SASBDB
• Panjkovich, A. and Svergun, D.I. (2016)
  SASpy: A PyMOL plugin for manipulation and refinement of hybrid models against small angle X-ray scattering data Bioinformatics 32(13), 2062-2064 DOI
• Kachala, M, Westbrook, J. and Svergun, D. (2016)
  Extension of the sasCIF format and its applications for data processing and deposition J. Appl. Cryst. 49, 302-310 DOI
• Panjkovich, A. and Svergun, D.I. (2016)
  Deciphering conformational transitions of proteins by small angle X-ray scattering and normal mode analysis Phys. Chem. Chem. Phys. 18, 5707-5719 DOI
• Kikhney, A.G., Panjkovich, A., Sokolova, A.V. and Svergun, D.I (2016)
  DARA: a web server for rapid search of structural neighbours using solution small angle X-ray scattering data Bioinformatics 32(4), 616-618 DOI   DARA
• Graewert, M.A., Franke, D., Jeffries, C.M., Blanchet, C.E., Ruskule, D., Kuhle, K., Flieger, A., Schäfer, B., Tartsch, B., Meijers, R., and Svergun, D.I. (2015)
  Automated Pipeline for Purification, Biophysical and X-Ray Analysis of Biomacromolecular Solutions Sci. Rep. 5:10734 DOI
• Kikhney, A.G. and Svergun, D.I (2015)
  A practical guide to small angle X-ray scattering (SAXS) of flexible and intrinsically disordered proteins FEBS Lett. 589(19A), 2570-2577 DOI
• Franke, D., Jeffries, C.M. and Svergun, D.I. (2015)
  Correlation Map, a goodness-of-fit test for one-dimensional X-ray scattering spectra Nat. Methods 12, 419-422 DOI   SASBDB
• Tria, G., Mertens, H. D. T., Kachala, M. and Svergun, D. I. (2015)
  Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering IUCrJ 2, 207-217 DOI
• Konarev, P.V. and Svergun, D.I (2015)
  A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems IUCrJ 2, 352-360 © IUCr DOI
• Petoukhov, M.V. and Svergun, D.I. (2015)
  Ambiguity assessment of small-angle scattering curves from monodisperse systems Acta Cryst. D71, 1051-1058 © IUCr DOI
• Blanchet, C.E., Spilotros, A., Schwemmer, F., Graewert, M.A., Kikhney, A.G., Jeffries, C.M., Franke, D., Mark, D., Zengerle, R., Cipriani, F., Fiedler, S., Roessle, M. and Svergun, D.I (2015)
  Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY) J. Appl. Cryst. 48(2), 431-443 © IUCr DOI
• Jeffries, C.M., Gräwert, M.A., Svergun, D.I. and Blanchet C.E. (2015)
  Limiting radiation damage for high-brilliance biological solution scattering: practical experience at the EMBL P12 beamline J. Synchrotron Rad. 22, 273-279 © IUCr DOI
• Valentini, E., Kikhney, A.G., Previtali, G., Jeffries, C.M. and Svergun D.I. (2015)
  SASBDB, a repository for biological small-angle scattering data Nucleic Acids Res. 43(D1), D357-D363 DOI   SASBDB
• Gräwert, M.A. and Svergun, D.I. (2013)
  Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS) Curr. Op. Struct. Biol. 23, 748-754 © Elsevier DOI
• Blanchet, C.E. and Svergun, D.I. (2013)
  Small-angle X-ray scattering on biological macromolecules and nanocomposites in solution Annu. Rev. Phys. Chem. 64, 37-54 © Annual Reviews DOI Any further/multiple distribution, publication, or commercial usage of this copyrighted material requires submission of a permission request addressed to the Copyright Clearance Center.
• Franke, D., Kikhney, A.G. and Svergun, D.I. (2012)
  Automated acquisition and analysis of small angle X-ray scattering data Nuc. Inst. Meth. A. 689, 52-59 © Elsevier DOI
• Petoukhov, M.V., Franke, D., Shkumatov, A.V., Tria, G., Kikhney, A.G., Gajda, M., Gorba, C., Mertens, H.D.T., Konarev, P.V. and Svergun, D.I. (2012)
  New developments in the ATSAS program package for small-angle scattering data analysis J. Appl. Cryst. 45, 342-350 © IUCr DOI
• Blanchet, C.E., Zozulya, A.V., Kikhney, A.G., Franke, D., Konarev, P.V., Shang, W., Klaering, R., Robrahn, B., Hermes, C., Cipriani, F., Svergun, D.I and Roessle, M. (2012)
  Instrumental setup for high throughput solution scattering at the X33 beamline of EMBL-Hamburg J. Appl. Cryst. 45, 489-495 © IUCr DOI
• Mertens H.D.T. and Svergun, D.I. (2010)
  Structural characterization of proteins and complexes using small-angle X-ray solution scattering J. Struct. Biol. 172(1), 128-141 © Elsevier DOI
• Franke, D. and Svergun, D.I. (2009)
  DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering J. Appl. Cryst. 42, 342-346 © IUCr DOI
• Petoukhov, M.V. and Svergun, D.I. (2007)
  Analysis of X-ray and neutron scattering from biomacromolecular solutions Curr. Op. Struct. Biol. 17(5), 562-571 © Elsevier DOI
• Svergun, D.I. (2007)
  Small-angle scattering studies of macromolecular solutions J. Appl. Cryst. 40, s10-s17
  © IUCr
• Bernado, P., Mylonas, E., Petoukhov, M.V., Blackledge, M., Svergun, D.I. (2007)
  Structural Characterization of Flexible Proteins Using Small-Angle X-ray Scattering J. Am. Chem. Soc. 129(17), 5656-5664 © American Chemical Society DOI
• Petoukhov, M.V., Konarev, P.V., Kikhney A.G. and Svergun, D.I. (2007)
  ATSAS 2.1 - towards automated and web-supported small-angle scattering data analysis J. Appl. Cryst. 40, s223-s228 © IUCr
• Mylonas, E. and Svergun, D.I. (2007)
  Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering J. Appl. Cryst. 40, s245-s249 © IUCr   SASBDB
• Petoukhov, M.V. and Svergun, D.I. (2006)
  Joint use of small-angle X-ray and neutron scattering to study biological macromolecules in solution Eur. Biophys. J. 35(7), 567-576 © EBSA
• Konarev, P.V., Petoukhov, M.V., Volkov, V.V., and Svergun, D.I. (2006)
  ATSAS 2.1, a program package for small-angle scattering data analysis J. Appl. Cryst. 39, 277-286 © IUCr DOI
• Petoukhov, M.V. and Svergun, D.I. (2005)
  Global rigid body modelling of macromolecular complexes against small-angle scattering data Biophys. J. 89, 1237-1250 © Biophysical Journal
• Svergun, D.I. and Koch, M.H.J. (2003)
  Small-angle scattering studies of biological macromolecules in solution Rep. Prog. Phys. 66, 1735-1782 © IOP Publishing Ltd.
• Volkov, V.V. and Svergun, D.I. (2003)
  Uniqueness of ab initio shape determination in small-angle scattering J. Appl. Cryst. 36, 860-864 © IUCr
• Kozin, M.B. and Svergun, D.I. (2001)
  Automated matching of high- and low-resolution structural models J. Appl. Cryst. 34, 33-41
• Svergun, D.I., Petoukhov, M.V. and Koch, M.H.J. (2001)
  Determination of domain structure of proteins from X-ray solution scattering Biophys. J. 80, 2946-2953
• Svergun, D.I. (2000)
  Advanced solution scattering data analysis methods and their applications J. Appl. Cryst. 33, 530-534
• Svergun, D. I. (1999)
  Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing Biophys. J. 76, 2879-2886
• Svergun D.I., Richars S., Koch M.H.J., Sayers Z., Kuprin S. and Zaccai G. (1998)
  Protein hydration in solution: experimental observation by X-ray and neutron scattering Proc. Natl. Acad. Sci. USA 95, 2267-2272
• Svergun D.I., Barberato C., and Koch M.H.J. (1995)
  CRYSOL - a program to evalate X-ray solution scattering of biological macromolecules from atomic coordinates J. Appl. Cryst. 28, 768-773
• Svergun D.I. (1992)
  Determination of the regularization parameter in indirect-transform methods using perceptual criteria J. Appl. Cryst. 25, 495-503
• Svergun, D.I. (1991)
  Mathematical methods in small-angle scattering data analysis J. Appl. Cryst. 24, 485-492
• Feigin, L.A. and Svergun, D.I. (1987)
  Structure Analysis by Small-Angle X-Ray and Neutron Scattering
  © Plenum Press / Springer